Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02208 ATGAGTTTTGCTAAAACAAGAAAAAGAACACATAGCACAAGAAAAGAAGGAGGATCATCATTAATGTCAGAGCAGGAAACCGATTCATGGGGCTTCCTGTTTGTCTGTTTCTTGATCCTCTTCTCAGGTAAATTAGTTGTTGGGGATTCGTTGGACACTGACGCAGAGGTTCTGCTGAAGCTGAAATCTTATTTGCAAAACCAAACTCTTGCAAATAGAGGACGGTACATAAGCTGGAACAATAACAGTTCAAATCCTTGTGATTGGTCAGGAATCGATTGCAGTCTCTTGAACGGGACAACAAGGAGGGTTGTGAAAGTAGACATCTCTTACAGTGACATATATGGTAATATATTCGATGGCTTCTCTAATCTCACTGAGCTCAGACACCTTGACATCTCTTGGAACTCTCTATCTGGGGGAATTCCTGAGGACTTGAGGATGAGCCACAAGCTTGTGTATCTCAATCTCTCCCATAATACTCTCGAGGGGGAGTTGAATCTGAAGGGATTGACTCAGTTGCAAACAGTGGACTTGTCTGTTAATAGGTTCCATGGGGAACTTGGGCTGAGTTTCCCTGCCATTTGTGACAGTTTGGTGACTTTAAATGTTTCAGATAATCACTTGAGTGGTGGGATTCATGGCTTCTTTGATCAATGCTTGAGGCTGCAGTACTTGGATTTGAGCACCAACCATCTAAATGGGACCTTGTGGACTGGATTTTCCAGGTTGAGAGAGTTTTCAATCTCAGAGAATTTTCTAACTGGGGTTGTTCCTCCCCTGGCTTTTCCAGTAAACTGTAGCATTGAGAATCTAGACCTTTCAGTGAATAGATTTGTTGGTAAGGCCCCCAAGGAGTTGTCTAACTGCAAGAATTTAGTGGTTCTCAACCTTTCTAGTAACAATTTCACTGGAGATATTCCCCGTGAAATTGGTTCCATTTCTGGTCTTGAGGGATTGTTCTTGGAGAACAATACTTTCTCAAGGGATATCCCAGAGACCCTTTTGACCTTAACCAATTTGTTCATCTTGGATTTGAGCAGAAACAAATTTGGTGGGGAGGTGCAGGAGATTTTCGGGAAATTCAAGCAACTGAAGTTTCTTGTGCTGCACTCAAATTCTTACACTGGAGGGTTGAACTCATCAAGCATATTTACATTGACAAACCTTAGCCGCTTGGACTTGAGCTTTAATAATTTTTCTGGTCCATTACCTGTTGAAATCTCACAAATGTCTGCACTCGCTTTCTTAACCTTAACCTACAACCAGTTCTCTGGACCTATTCCTTTTGAATTGGGAAAGTTGACTCGCCTTATGGCACTTGATCTTGCCTTCAACAGTTTCAGTGGACCGATCCCACCAAGCCTTGGAAAGTTGACTTCTCTCTTATGGCTAACACTTTCAGATAATTCATTAACCGGAGAAATCCCACCAGAGTTGGGAAAATGCTCAAGCATGTTATGGCTAAACCTTGCGAACAACAAACTATATGGAAAAATTCCTTCCGATCTAACAAGAATTGGAAGGAATGCAAGGGCCACATTTGAATCAAATCAAAAGAATCTTGGGGGAGTTGTTGCTGGCAATAGTGAGTGCTTAGCAATGAAGAGATGGATACCTGCTGATTACCCTCCGTTCAGCTTCGTGTATAACATCCTGACAAGGAAGAATTGTAGAGCCCTTTGGGACAGGTTGCTCAAAGGATATGGTATCTTCCCCATGTGTACATCTGAGAACTCTGCTAGATCATCACACATAGCAGGGTATCTTCAGCTAAGTGGGAACTATTTGAGTGGTGAGATTCCTTCAGAAATTGGGACCATGGTAAACTTTAGCATGTTGCATTTGGGAGATAACAATTTCACGGGGAAATTCCCTCCAGGGATGGTAGATTTACCACTTGTAGTCTTGAACATGACCAGAAACAATTTTTGTGGTGAAATTCCAAGTGAAATTGGTAACATGAAGTGTTTACAGGATCTTGATTTGTCTAGGAACAATTTCTCTGGAACATTTCCCATAAGTCTGGCACACTTGGATGAGCTTAGCAGGTTCAACATCTCATACAATCCCCTCATATCTGGTACAGTCCCACCATCTGGACACTTACTCACTTTTGACAAGGATTCATATTTGGGTGACCCCCTCTTGAACCTACCAAAGTTCTTTAACATCTCTGATGATAGAAATAACACTTTACATAGAGTCTTGAAAAATCCCACAAAATGGTCTTTGGTTTTGGCTCTAGGACTGGCTATCGTGGTCTTTGGACTTCTTTTCCTTGTGATATGTTTCTTGGTGAAAAGTCCATCTGTGGAACCAGGATACCTCATGAAGAATATAAAGAAGCAAGCACATGATTCAGGCAGCTCCGGATCCTCACCATGGTATTCTGACACAGTTAAGATATTCCACCTGAACAAGACAGTTTTCACACATGCAGACATCTTGAAAGCAACCTCCAACTTCACAGAGGAGAGAGTCATAGGAAGGGGTGGCTATGGAACAGTATATAGAGGGTCATTTCCAGATGGGAGAGAGGTGGCGGTTAAGAAACTCCAAAGGGAAGGAACTGAGGGTGAAAAAGAATTCAGAGCTGAAATGAAGGTTCTAAGTGGTCATGGATTTAGCTGGCCTCATCCAAACCTTGTCACACTGTATGGTTGGTGCCTCTATGGTTCACAGAAGATACTCGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGAACTTGTGACTGATACAAAAAGATTGAGATGGAGAAGGCGCCTAGAAGTGGCAATTGATGTGGCCAGGGCACTTGTCTATTTACACCATGAGTGCTACCCTTCTATTGTGCATAGAGATGTGAAGGCTAGTAACGTGTTGCTAGACAAGAATGGGACGGCCAAGGTCACAGACTTTGGACTTGCTAGGATTGTTGATGTTGGAGACAGTCATGTGAGCACTATAGTGGCTGGCACAGTGGGCTATGTCGCACCAGAATATGGACAAACATGGAAAGCCACCACAAAAGGGGATGTGTACAGTTTTGGGGTGTTGGTTATGGAGCTAGCAACTGGGAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGACTAGGCGTGTTATGATGGGTTCTGGAAGACAAGGGTTAGCTCAATCTGTGCCAGTTTTGTTGAAGGGAAGTGGGGTGGTTGAGGAGGCTAAGGAGATGGGTGAGTTGCTCCAAGTTGGAGTGAAATGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGATATGCTTATTAAGATATATGATCCCACTGGGGACTCAAATTATGGATACCTTGTGTAG 3339 0.4316 MSFAKTRKRTHSTRKEGGSSLMSEQETDSWGFLFVCFLILFSGKLVVGDSLDTDAEVLLKLKSYLQNQTLANRGRYISWNNNSSNPCDWSGIDCSLLNGTTRRVVKVDISYSDIYGNIFDGFSNLTELRHLDISWNSLSGGIPEDLRMSHKLVYLNLSHNTLEGELNLKGLTQLQTVDLSVNRFHGELGLSFPAICDSLVTLNVSDNHLSGGIHGFFDQCLRLQYLDLSTNHLNGTLWTGFSRLREFSISENFLTGVVPPLAFPVNCSIENLDLSVNRFVGKAPKELSNCKNLVVLNLSSNNFTGDIPREIGSISGLEGLFLENNTFSRDIPETLLTLTNLFILDLSRNKFGGEVQEIFGKFKQLKFLVLHSNSYTGGLNSSSIFTLTNLSRLDLSFNNFSGPLPVEISQMSALAFLTLTYNQFSGPIPFELGKLTRLMALDLAFNSFSGPIPPSLGKLTSLLWLTLSDNSLTGEIPPELGKCSSMLWLNLANNKLYGKIPSDLTRIGRNARATFESNQKNLGGVVAGNSECLAMKRWIPADYPPFSFVYNILTRKNCRALWDRLLKGYGIFPMCTSENSARSSHIAGYLQLSGNYLSGEIPSEIGTMVNFSMLHLGDNNFTGKFPPGMVDLPLVVLNMTRNNFCGEIPSEIGNMKCLQDLDLSRNNFSGTFPISLAHLDELSRFNISYNPLISGTVPPSGHLLTFDKDSYLGDPLLNLPKFFNISDDRNNTLHRVLKNPTKWSLVLALGLAIVVFGLLFLVICFLVKSPSVEPGYLMKNIKKQAHDSGSSGSSPWYSDTVKIFHLNKTVFTHADILKATSNFTEERVIGRGGYGTVYRGSFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGHGFSWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEELVTDTKRLRWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKNGTAKVTDFGLARIVDVGDSHVSTIVAGTVGYVAPEYGQTWKATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWTRRVMMGSGRQGLAQSVPVLLKGSGVVEEAKEMGELLQVGVKCTHDAPQARPNMKEVLDMLIKIYDPTGDSNYGYLV 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02208 1112 ProSitePatterns Protein kinases ATP-binding region signature. 829 852 IPR017441 GO:0005524
Phco7g02208 1112 FunFam Leucine-rich repeat receptor protein kinase MSP1 786 902 - -
Phco7g02208 1112 Pfam Leucine rich repeat N-terminal domain 52 95 IPR013210 -
Phco7g02208 1112 Gene3D Ribonuclease Inhibitor 433 523 IPR032675 -
Phco7g02208 1112 Gene3D Ribonuclease Inhibitor 579 732 IPR032675 -
Phco7g02208 1112 Gene3D Ribonuclease Inhibitor 265 378 IPR032675 -
Phco7g02208 1112 Gene3D Ribonuclease Inhibitor 50 195 IPR032675 -
Phco7g02208 1112 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 360 1098 - -
Phco7g02208 1112 MobiDBLite consensus disorder prediction 1 21 - -
Phco7g02208 1112 SUPERFAMILY L domain-like 102 309 - -
Phco7g02208 1112 FunFam Putative LRR receptor-like serine/threonine-protein kinase 362 524 - -
Phco7g02208 1112 SMART LRR_typ_2 338 361 IPR003591 -
Phco7g02208 1112 SMART LRR_typ_2 387 411 IPR003591 -
Phco7g02208 1112 SMART LRR_typ_2 459 483 IPR003591 -
Phco7g02208 1112 SMART LRR_typ_2 125 149 IPR003591 -
Phco7g02208 1112 Pfam Protein kinase domain 823 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02208 1112 SUPERFAMILY L domain-like 589 706 - -
Phco7g02208 1112 Gene3D Phosphorylase Kinase; domain 1 790 902 - -
Phco7g02208 1112 Pfam Leucine Rich Repeat 128 146 IPR001611 GO:0005515
Phco7g02208 1112 Gene3D Transferase(Phosphotransferase) domain 1 904 1107 - -
Phco7g02208 1112 Gene3D Ribonuclease Inhibitor 379 432 IPR032675 -
Phco7g02208 1112 Gene3D Ribonuclease Inhibitor 196 264 IPR032675 -
Phco7g02208 1112 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 260 355 - -
Phco7g02208 1112 SUPERFAMILY Protein kinase-like (PK-like) 801 1097 IPR011009 -
Phco7g02208 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Phco7g02208 1112 ProSiteProfiles Protein kinase domain profile. 823 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02208 1112 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 903 1104 - -
Phco7g02208 1112 SUPERFAMILY L domain-like 268 518 - -
Phco7g02208 1112 CDD STKc_IRAK 829 1099 - -
Phco7g02208 1112 SMART serkin_6 823 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02208 Phco-Chr7 38974332 38977972 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Phco7g02208 Pkinase 3.3e-43 CL0016