Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02198 ATGGTGAGGTCTCCTTGTGAAAAAGTCAATGTCAAAAGGGGTGTGTGGACCACAGAAGAAGATACAAAGAAGCTTGCATTTGGCTCCAGGCATGGATCTGGTAACTGGACTTCTGTCCCCAAAAAAACAAGGCTCAAGAGGTGTGGAAAGAGTTGTAGGCTTAGATGGGGTAACTGCCTCAGGCCTGATCTTAAGCACGACAATTTCACAACCCAAGAAGAAGATCTAATCATTAAGCTTCACGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAACTTCCAGGGAGAACAGACAATGATGTAAAGATCTACTGGAACACAAAGCTGAAAAAGAAACTCTCTCAAATGGGGATTGATCCTGTTACCCACAAGCCCTTTTCTAAACTCATTGCTGACTATGGAAACATTGGGGGTTGCCAGAAACCAAGTGCCCGAATAGGGTCTATCAATAAAGAGTTCAAGAGTGCAATGATGCTGAAATCAGAACCCCACCAAACCATGCCACAAGGATTCACAAACATCAATGACCAACCAAAGCTACCACCCCAAATGGAAACCACTGGAAATAACTTTTTATTCAATAGAAACCATGGTGATAACCTCTCAATGGATCTTGTCCAGTTCCAAGCCATACCAATGGTGTCACGTGCCTCAAATAGCATAGACTTTGAGAACGAGACCATCCCAAGATCTGTGTTTGGGGAAGACCGTTTGTCAAAAACTTCATCACCATCTACTCCTTCTACTTGTTCCACTTCAGCTTTTAGTTGGAATGACTTCCTTCTGGAAGATGCTTTTACACCAGTTGATTACCAGGAAAAAGACATCATGGTTTCAAAGAACTTGGTGAGCCAAATTGAGAATGTGGTGACCAGACAGAGTTGGAATAATAAAGAGGTTAAGTCACAGCAGGCCTTAGGTAGTGACTTCCAATTTTCATCATCCTCTGACACTTCATTCATAGAAGCCATGCTTGGTCAAGAAAATGAAATGTTTCTAAGTTTTCCTCACCTTATGGAGGAACCATCCAACTTGAGTTAA 1047 0.425 MVRSPCEKVNVKRGVWTTEEDTKKLAFGSRHGSGNWTSVPKKTRLKRCGKSCRLRWGNCLRPDLKHDNFTTQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKIYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGCQKPSARIGSINKEFKSAMMLKSEPHQTMPQGFTNINDQPKLPPQMETTGNNFLFNRNHGDNLSMDLVQFQAIPMVSRASNSIDFENETIPRSVFGEDRLSKTSSPSTPSTCSTSAFSWNDFLLEDAFTPVDYQEKDIMVSKNLVSQIENVVTRQSWNNKEVKSQQALGSDFQFSSSSDTSFIEAMLGQENEMFLSFPHLMEEPSNLS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02198 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Phco7g02198 348 SMART sant 12 62 IPR001005 -
Phco7g02198 348 SMART sant 65 113 IPR001005 -
Phco7g02198 348 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Phco7g02198 348 Gene3D - 67 128 - -
Phco7g02198 348 Gene3D - 6 66 - -
Phco7g02198 348 FunFam Os07g0634900 protein 68 127 - -
Phco7g02198 348 CDD SANT 68 111 IPR001005 -
Phco7g02198 348 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Phco7g02198 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Phco7g02198 348 FunFam MYB-related transcription factor 12 65 - -
Phco7g02198 348 Pfam Myb-like DNA-binding domain 68 109 IPR001005 -
Phco7g02198 348 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Phco7g02198 348 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Phco7g02198 348 PANTHER F14D16.11-RELATED 1 345 - -
Phco7g02198 348 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02198 Phco-Chr7 38846917 38848571 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco7g02198 Myb_DNA-binding 1.2e-07 CL0123