Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02196 ATGGATCCTCCTCTCATCACCGACTCCACATTCTCCCCCGCTTACACCCTCGCCGATATTTGGCTCCGAACACCCCCTTTTCTCCCCTCCGACCACCACTTCTCCAAGAATGATTCTGGTAGCAATAAACGGATGAAGGTGGAAGGGTCCAGCGTTGAAAATGATGGTTTCAAAGCTGAAGCAGAAACAAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCATTATACCTTGTGAGGCACCTAAACAAGAATATATTCACGTGAGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCAAGAAGGGAAAAAATCAGTGATAGAATGAAAGTTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAAATGGTAAAGCACTTGTCCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCTATGAAGCTTGAAGCAGTTAATTCAAGGATGAACATGAGCCCTACCATAGATGGGTTGCCTTTAAAAGATGTTGGTGGTACTCCACGATTCGACACTGCAGGAATGGTATTTGGATCACAAGCAGCAAGAGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATAGGTGGTGGTTTGAGAGAACAGCATCATTCTGAGAAATCTCATTGGGAATGA 684 0.4518 MDPPLITDSTFSPAYTLADIWLRTPPFLPSDHHFSKNDSGSNKRMKVEGSSVENDGFKAEAETSSVSGNKSSEQSIIPCEAPKQEYIHVRARRGQATDSHSLAERARREKISDRMKVLQDLVPGCNKVNGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMSPTIDGLPLKDVGGTPRFDTAGMVFGSQAARGYAQGSHPGWLHMQIGGGLREQHHSEKSHWE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02196 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 165 IPR036638 GO:0046983
Phco7g02196 227 CDD bHLH_AtBPE_like 85 164 - -
Phco7g02196 227 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Phco7g02196 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Phco7g02196 227 Gene3D - 92 169 IPR036638 GO:0046983
Phco7g02196 227 SMART finulus 101 151 IPR011598 GO:0046983
Phco7g02196 227 MobiDBLite consensus disorder prediction 32 74 - -
Phco7g02196 227 FunFam Basic helix-loop-helix transcription factor 92 164 - -
Phco7g02196 227 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 199 IPR024097 GO:0006355
Phco7g02196 227 Coils Coil 142 162 - -
Phco7g02196 227 MobiDBLite consensus disorder prediction 36 55 - -
Phco7g02196 227 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02196 Phco-Chr7 38816731 38819778 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco7g02196 HLH 8.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02196 7 38816731 38819778 Phco7g02196 7 38816731 38819778 ECH