Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02193 ATGCCTCTCTCCTCCGCCTCCGCCGCCCCTCACTCCGCCGAGATCATGCTCTTCGGAGTCAGAGTCGTGGTGGACTCCATGAGGAAGAGCGTCAGCATGAGCAACCTCTCCCAGTACGATCACCCTCGCGATAACGCCAAAGACGACGCCGTCGCCGCCGGCTACGCCTCCGCCGATGATGCTGCTCCGATCAACTCCGGAAAAAACCGCGACCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACACGAACTCCAACTCAAGTTGCTAGCCATGCTCAAAAATACTTTCTCCGCCGTACCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATCACCACCGATTCGGTCTCTACAACCCCGATGGAGGAAGGACAGATCCAGCATCAAGATAACGTGTCTCTTGTGCATCCCATGTACCCTGTTACCTCTGAAGGAAGCAACATGAACGGATTTTCAATGATGCCTATGTATTCGAAGGATATTGGTTCTGGAATTATGTCAGCTCCAGCTGGGAATCCAATGAAAATACTTACTTTGGGACAAGGAAATGTGGAACAGAATGGGCCTAGTACTAAGCTATTTTCTACGGCCCATATTGTTCCAGATCATAAAGGCTCCGCAGCGTCTGATATCACTGCCAGTTTAAGTTCAGTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAAACAACATCAATACATTCAGCTTTTCATTCACTGTCGTGTTTAAACAGTGGAGATAGCGTCATAAGCGTTGCTTAG 867 0.5006 MPLSSASAAPHSAEIMLFGVRVVVDSMRKSVSMSNLSQYDHPRDNAKDDAVAAGYASADDAAPINSGKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSTTPMEEGQIQHQDNVSLVHPMYPVTSEGSNMNGFSMMPMYSKDIGSGIMSAPAGNPMKILTLGQGNVEQNGPSTKLFSTAHIVPDHKGSAASDITASLSSVDPPTLSLGLSLSSSQRQTTSIHSAFHSLSCLNSGDSVISVA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02193 288 ProSiteProfiles Myb-like domain profile. 70 122 IPR001005 -
Phco7g02193 288 PANTHER TRANSCRIPTION FACTOR KUA1 12 216 - -
Phco7g02193 288 SMART sant 74 124 IPR001005 -
Phco7g02193 288 Pfam Myb-like DNA-binding domain 77 122 IPR001005 -
Phco7g02193 288 NCBIfam myb-like DNA-binding domain, SHAQKYF class 73 124 IPR006447 GO:0003677
Phco7g02193 288 ProSiteProfiles SANT domain profile. 78 126 IPR017884 -
Phco7g02193 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 126 IPR017930 -
Phco7g02193 288 Gene3D - 76 128 - -
Phco7g02193 288 CDD SANT 77 122 IPR001005 -
Phco7g02193 288 FunFam transcription factor MYB1R1 76 127 - -
Phco7g02193 288 SUPERFAMILY Homeodomain-like 72 126 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02193 Phco-Chr7 38795993 38798894 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco7g02193 Myb_DNA-binding 1.4e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02193 7 38795993 38798894 Phco7g02193 7 38795993 38798894 ECH
Phco8g01279 8 13389382 13390865 Phco7g02193 7 38795993 38798894 PCT