Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02181 ATGTCTACCTCCTCAACCCACCACACCTATAGCCGAAAGCAGAAATCACTCGGCTTATTATGCACCAATTTTCTGCGCCTGTACAACAGAGAAGGCGTTCGCTTAATTGGTCTCGATGACGCTGCCTCGCGATTAGGAGTTGAAAGACGCCGGATCTACGACATCGTCAATGTCCTAGAGAGCGTCGGGGTGCTGGCTAGAAAAGCTAAGAATCAGTATACCTGGAAAGGCTTTTCTGCAATTCCCGAGGCTTTGCAAGAACTCAAGGAAGATGGTTTGAAAGAGAACCCTGGGTCTTTTGATGACTCCAATGACAGCGCGAAAGTGTCTGATGATGAGGATGAGGAGGAAACTTCTCCCAATGTCAATAATGAAAGTCAGAATGACAAAGAAATTACTGATTCCGCCGCTCTTGCCCTATCTTCTAAGAATGAAAACAGAAGGGAAAAGTCTCTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTATCTGCTCTAGTATTGAAATGATCTCCCTTGACGAAGCTGCAAAGTTGTTGCTTGGAAATGCTAATACATCAATAATGAGGACAAAAGTCAGACGCCTATATGATATTGCAAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAATACAAGAAAACCAGCCTTTAGATGGTTGGGTTGGAGAGGGAAAGCATGGAGTGAATCAGTCGACTTCGCTCACAATTCAAGTGTCAGTGAGTCAGGGAAAAGAAAGTTTGGAACTGACATCACAAACACAAGTTTTAAAAGGAGCAAGACTGATTTGCTCTTGGATGGCCAGACCTGTAAAATGCAAAATCAACGAGAAAATATTAGCTATACGCAGCCGGAGAAAAGCTACTTAGAAAAAGATGCAAAACAGACTTCAAAGGGCTATCAGTTTGGTCCTTTCGCTCCAGCTTATGTGCCCAAAGTCGGAACCTCTGAAAGTAATAGTGGGAATCAGGTGCATGACTGGGACAGCCTCGCACAGGTTCATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGACCTATTCTCTCACTACATGGATGCATGGAAATCATGGTACTCTGAAGTTGCTGAGAAAAAGCCAACGAAAACATTATAA 1128 0.4326 MSTSSTHHTYSRKQKSLGLLCTNFLRLYNREGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKVSDDEDEEETSPNVNNESQNDKEITDSAALALSSKNENRREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNANTSIMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWSESVDFAHNSSVSESGKRKFGTDITNTSFKRSKTDLLLDGQTCKMQNQRENISYTQPEKSYLEKDAKQTSKGYQFGPFAPAYVPKVGTSESNSGNQVHDWDSLAQVHRPQYQNQALRDLFSHYMDAWKSWYSEVAEKKPTKTL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02181 375 SUPERFAMILY "Winged helix" DNA-binding domain 149 227 IPR036390 -
Phco7g02181 375 FunFam E2F transcription factor 8 7 79 - -
Phco7g02181 375 FunFam E2F transcription factor-like E2FE 142 228 - -
Phco7g02181 375 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Phco7g02181 375 Gene3D - 7 79 IPR036388 -
Phco7g02181 375 Gene3D - 141 228 IPR036388 -
Phco7g02181 375 MobiDBLite consensus disorder prediction 93 132 - -
Phco7g02181 375 SMART E2F_TDP_2 147 226 IPR003316 GO:0005667|GO:0006355
Phco7g02181 375 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Phco7g02181 375 Pfam E2F/DP family winged-helix DNA-binding domain 149 226 IPR003316 GO:0005667|GO:0006355
Phco7g02181 375 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Phco7g02181 375 PANTHER TRANSCRIPTION FACTOR E2F 5 344 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02181 Phco-Chr7 38668052 38673386 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phco7g02181 E2F_TDP 2e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02181 7 38668052 38673386 Phco7g02181 7 38668052 38673386 ECH
Phco8g01267 8 13261129 13264151 Phco7g02181 7 38668052 38673386 PCT