Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02162 ATGCATGGACGTGGATGTGAGAAGGGTACTCGGCACATGTGGAAAGCCCCCACACGTGGTGACTCATCTCTGAACGCCGATGTTTCTTCGTCTTCTTCGTCGTCGTCGTCGACTGTGAAGTCGTTCTTTAAGGACCGTCGCAAAATTAGTGTTGGTGAATGTGCTCTCTTTAAAGTATCTGAAGATCACCCACCATTTATTGGTATAATTCGTTATCTGACAATTGGCAAAGATAAAAAGTTGAAGTTTGGTGTTAGTTGGCTCTATCGATCCATTGAAGTAAAACTCAGCAAGGGCGTGCCATTGGAGGCTGCTCCAAACGAAATCTTCTACACCTTCCATAAGGATGAGATTGATGCTGAAGCACTGCTCCATCCTTGTAAAGTTGCATTTCTTCCCAAGGGGGCTGAACTTCAACCAGGGATTTCTTCATTTCTGTGCAGGAGGGTTTATGACATTGCAAACAAGTGTTTATGGTGGTTAAATGATCAAGATTATATTAATGATTGTCAAGAAGAAGTAGATAAACTATTATACAGAAATTGTGTAGAAATGCATGCTACAGTACAGCCAGGTGGCCATTCTCCTAAACCTATGAGTAGTCCAACATCAACTTCACAGTTAAAATCTGCTTCAGATAGTGTCCAGAATAGTACTTCTTCCTTTCCATCTCACATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGTCTGTCAAGCGAGAGCGATCAATAAAAGCTGAGGATGGGGATTCTGGCAATTTCAGGCATGATAATATTTTCAAGACAGAGATTGCAAAAATTACTGAGAAGGGAGGGCTTGTTGATGGTGAAGGAGTTGAAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAAAAGAAGATAGATATAGCTAGCCGGTCATTGCTTGCAGCTGTCATTGCAGCAACAGATAAGTTAGATTGTCTTAGTCAGTTTGTGCAGCTAAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGTGATGGTGATAAATCTGCTGAGGAATTTCTGTTGGTATTGCTTCGGGCACTTGATAAACTTCCAGTAAATCTTCAGGCTTTACAAACATGCAACATTGGAAAATCTGTGAATCATTTGCGAACTCACAAAAACACTGAAATTCAGAGGAAAGCTAGAGGTTTAGTTGATACATGGAAGAAACGTGTTGAAGCAGAAATGAATATAAATGATGCTAAGTCTGGTTCAGGTCCCAATGTCCACTGGCCTGCCAAATCTCGTCCTTCTGATGTTGGTCAAGGTGGGAATAGACATTCAGGTGCATCATCAGATGTTGGCATGAAGAGTTCAGTTACACAGCTTTCTGCTTCCAAAACTGCCTCTGTGAAGATTGTCCAAGGAGAGAATATTACTAGATCAGCATTGACATCTGCGTTTCCAGGGCCTGCAAAATCAGCGCCGTCACCTGCAGCTGTGACTGCAAACTTGAAAGATGGGCAGCCTCGTATTGTTGCAGTCAATGGAGGTTCTGATCTTCCCATGGCAAATGCAAGGGATGAGAAAAGTTGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTGTTCTAGCGACCATGCTAAAAATGGAGGTCACTCAGTAAAGGAGGATGCCAGAAGCTCTACTGCAATGAGTGTGAATAAGATTTCTGGAGGCTCTTCACGACATCGAAAATCCATTAATGGTTTTTCAGGTTCAAATCCATCTGGAGGGCAAAGGGAAACTGGATCAAGTAGGAATTCCTCCTTGCACAAAAATTTAACTTCAGAGAAAATATCTCAACCTGGATTAATGGATAAGGCAGTTGATGGAACTTCTCTCGAGGGCAATATTCCAAAACTGATTGTTAAGATTCCAAACCAAGGTAGAAGTCCTGCACAAAGTGTCAGTGCTGGTTCTTTTGATGATCCTACAATCATGAATAGTCGAGCCTCATCTCCTGTTCTTCCTGAGAAGCATGATCAGTCTGATCACAGCCCAAAGGAAAAGAGCGACCTTTATCGAGTGAATATTGGCTCAGATATTAATACTGAATCTTGGCAGAGTAATGATTTTAAAGACGTATTGACTGGCTCTGATGAGGGTGATGGATCACCTGCCGCAGTTACTGATGAAGAGCACTGTCGTACTGGCAATGATTGTAAGAAGGCATTGGAGGTATCAAAAGCTGCTTCATCATCATCTGGAAATGAACATAAAGCTGGCAATATGCAGGATGCTTCTTACAGCTCGATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCTGATGATGGTGGAATGAATCTTCTTGCTAGTGTGGCCGCAGGAGAGATATTGAAATCTGAGTTGTTAACTCCAGCTGGATCTCCAGAAAGAAACACAACTGCTGTCGAACAGTCATGCACAGACAATGGTGTTAATAAGTCCTCTGAAGAAAATCTTGTTCGGGATGAATGCCATTCGAATAATGGTCTTGATGGTGAACATAAGAATGTGGGTTCTGTAACAGGTGATTTAGGGGCAAATGATGAAAGCGATTCTGATTTTCAAGCATCTGGAGCGAAAGCTGCAAGAGAGCTAAATAAGCGTGTTAATGCATGTAGTATGGATTTGCAACAGGTTACTGAAACTACTTTGGAAAGCAAAGGAAAATTAAATGAAAAATCTGGACCTACTTCTCTGGGTGTCCTTGCTGAAAAGTCTGTGCAAGAAGCTGGAGATGGTGACCGAAGCAAGCAGCTCCAGGAGGTTGTTCAGGGAGGGAATGCTGGCGAAACTCATGATAAGGTCAGTTGTGTTGCAGAAGTTGAGGCAGAAGCAGCTAAAAAATTGTTACATACAGCTGTGGAAGTGGATGTACAAAGTGATAACTGTACTGCTGAAGGATCAAGTGGCTGTGGACAGTTTGTTAAAAAGCCTCCTGCTATACTTGTGCAGTCTGATTTGGCAAGTGGAAAAGATGATAATGCACTCCATTCTTCTGGTTATAGTGTTGACGAGGTTCCTAAAGACTTCACTGATCGGGAATCTGAGAAAACTGATGATGTTGATGCTGAGAATCATGTCAGTCAGTCTAAAAATAAAAGAAATGAGTCTGAAAGTGATGCCTTGACGATGCCTGAGAATAGAGGTTTATGTTCTATTGTGACTGGTCTTGTTGCTGAACATGTGGAGGAGAATTTAGAAACGAAAGAGGTTTGTGATCAACCTGCTAGAGAGGATCTTCCTGAAGATTCACCTATTGTTCGTTCACAAGAAATAGATAAGCATCTTGATTCCAAAAGATTAAAATTGACTTCCACAGAAACAGAGGAGGCTGAAGAGTGTACCTCTACCACTGCAGATGCTTCTTCAATGTCTGCTGCAGCTGTGTCAGATGTGGATGCAAAGGTTGAATTTGATTTAAATGAAGGGCTCAATGCAGATGATGGAAGATGTGAGTTCAACAGCATTGCCACTTCTGGATGTGCACCTGCAGGTCAATTGATCAGTCCTGTGCCATTTCCTGCTTCATCTATGTCTGGTATTCTTGCTCCAGTTACTGTGGCGTCTGCTGCAAAGGGGCACTTTGTACCTCCGGAATATTTATTGAGAAGTAAAGGGGAAATTGGTTGGAAGGGATCAGCTGCCACCAGTGCATTCAGGCCAGCCGAACCCAGGAAAGTTACGGAAATGCCTCTTGGTACATCAGCTACCCCTATTACTGATGCTCCAGCTGGAAAGCAGAATCGAACACCATTGAATATTGACTTGAATGTGGCCGATGAAAGAATACTTGATGATATTTCTTGTGCACGACACACAAATTCTATATCTCTTGCAACTGATTGTCATGATCCTGCATGCAGTAAGATACCTTCACCTGTTCGCAGCTCTGGAGGGCTTGGTCTTGACTTGAACCAAGCTGATGATGCTTCTGAAATTGACATCTGCTTGAGTAGTAATCATAAAATTGATGTGCCAACTATGCAGGGGAAGTCATCATTGGGTGGTCCACCAAATAGAGAAGCGAATGTCCACAGGGACTTTGATTTGAACAACGGACCTTCTGTTGATGAAGTCACAACTGAATCCTTATTCTTCTCTCAGTATGCCAGGAGCAGTGTGCCATCTCAATTACCTGTTTCTGGACTTAGAGTGGCTACTGCTGAGCCAGGCAACTTCTCTTGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAGTTGTTGCTCCAAATGGGCCACAAAGGTTGTTGACTCCTGCTGCTGGTGGCAACCCATTTGGACCTGATATTTATAGGGCTCCTGTATTGTCTTCTTCTCCTGCAGTGTCATATCCATCTGCTCCATTTGAATATCCTGTCTTCCCTTTTAACTCCAGCTTCCCTCTTCCATCAGCTTCTTTTTCTTCTGGATCAACTGCCTATGTATATCCAACATCTGCCAATCGGCTTTGCTTCCCTGCAGTAAATTCACAGTTAACGGGGCCTGCTGGCCCGGTTTCATCTCATTACCCCAGGCCTTATGTTGTTGGTCTTACAGAAGGTAGCAATAGTGGTAGTGCTGAGACCAGTAGAAAATGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGGTGTTCAGACATGGAAGGGAGAGATGAGAGTTCGCCTCTTCCATCTAGGCAACTTTCTGTTGCTAGTTCACAGGCCCTAGCTGAGGAGCAAGCAAGGATCCAGCTTGCAGGTAGTGTTCGCAAGAGAAAGGAGCCTGATGGTGGGTGGGATGGCTACAACCAATCCTCATGGCAATAG 4854 0.4328 MHGRGCEKGTRHMWKAPTRGDSSLNADVSSSSSSSSSTVKSFFKDRRKISVGECALFKVSEDHPPFIGIIRYLTIGKDKKLKFGVSWLYRSIEVKLSKGVPLEAAPNEIFYTFHKDEIDAEALLHPCKVAFLPKGAELQPGISSFLCRRVYDIANKCLWWLNDQDYINDCQEEVDKLLYRNCVEMHATVQPGGHSPKPMSSPTSTSQLKSASDSVQNSTSSFPSHIKGRKRERADQGSESVKRERSIKAEDGDSGNFRHDNIFKTEIAKITEKGGLVDGEGVEKLVQLMVPDRNEKKIDIASRSLLAAVIAATDKLDCLSQFVQLRGLPVFDEWLQEVHKGKIGDGDKSAEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRTHKNTEIQRKARGLVDTWKKRVEAEMNINDAKSGSGPNVHWPAKSRPSDVGQGGNRHSGASSDVGMKSSVTQLSASKTASVKIVQGENITRSALTSAFPGPAKSAPSPAAVTANLKDGQPRIVAVNGGSDLPMANARDEKSCSSSQSHNNSQSCSSDHAKNGGHSVKEDARSSTAMSVNKISGGSSRHRKSINGFSGSNPSGGQRETGSSRNSSLHKNLTSEKISQPGLMDKAVDGTSLEGNIPKLIVKIPNQGRSPAQSVSAGSFDDPTIMNSRASSPVLPEKHDQSDHSPKEKSDLYRVNIGSDINTESWQSNDFKDVLTGSDEGDGSPAAVTDEEHCRTGNDCKKALEVSKAASSSSGNEHKAGNMQDASYSSINALIEGVKYSEADDGGMNLLASVAAGEILKSELLTPAGSPERNTTAVEQSCTDNGVNKSSEENLVRDECHSNNGLDGEHKNVGSVTGDLGANDESDSDFQASGAKAARELNKRVNACSMDLQQVTETTLESKGKLNEKSGPTSLGVLAEKSVQEAGDGDRSKQLQEVVQGGNAGETHDKVSCVAEVEAEAAKKLLHTAVEVDVQSDNCTAEGSSGCGQFVKKPPAILVQSDLASGKDDNALHSSGYSVDEVPKDFTDRESEKTDDVDAENHVSQSKNKRNESESDALTMPENRGLCSIVTGLVAEHVEENLETKEVCDQPAREDLPEDSPIVRSQEIDKHLDSKRLKLTSTETEEAEECTSTTADASSMSAAAVSDVDAKVEFDLNEGLNADDGRCEFNSIATSGCAPAGQLISPVPFPASSMSGILAPVTVASAAKGHFVPPEYLLRSKGEIGWKGSAATSAFRPAEPRKVTEMPLGTSATPITDAPAGKQNRTPLNIDLNVADERILDDISCARHTNSISLATDCHDPACSKIPSPVRSSGGLGLDLNQADDASEIDICLSSNHKIDVPTMQGKSSLGGPPNREANVHRDFDLNNGPSVDEVTTESLFFSQYARSSVPSQLPVSGLRVATAEPGNFSWLPSSGNTYSAVTISSIMPDRGDQPFSVVAPNGPQRLLTPAAGGNPFGPDIYRAPVLSSSPAVSYPSAPFEYPVFPFNSSFPLPSASFSSGSTAYVYPTSANRLCFPAVNSQLTGPAGPVSSHYPRPYVVGLTEGSNSGSAETSRKWTRQGLDLNAGPGCSDMEGRDESSPLPSRQLSVASSQALAEEQARIQLAGSVRKRKEPDGGWDGYNQSSWQ 1617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02162 1617 MobiDBLite consensus disorder prediction 1 15 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 798 820 - -
Phco7g02162 1617 Pfam TFIIS helical bundle-like domain 357 406 IPR017923 -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 797 865 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 1012 1047 - -
Phco7g02162 1617 CDD TFIIS_I 342 407 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 997 1050 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 1534 1617 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 698 726 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 194 224 - -
Phco7g02162 1617 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 281 410 IPR035441 -
Phco7g02162 1617 ProSiteProfiles BAH domain profile. 47 162 IPR001025 GO:0003682
Phco7g02162 1617 MobiDBLite consensus disorder prediction 1 38 - -
Phco7g02162 1617 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1617 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 522 544 - -
Phco7g02162 1617 ProSiteProfiles TFIIS N-terminal domain profile. 329 409 IPR017923 -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 435 451 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 412 451 - -
Phco7g02162 1617 Pfam BAH domain 48 155 IPR001025 GO:0003682
Phco7g02162 1617 MobiDBLite consensus disorder prediction 479 620 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 1534 1550 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 22 38 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 1571 1588 - -
Phco7g02162 1617 SMART BAH_4 47 162 IPR001025 GO:0003682
Phco7g02162 1617 MobiDBLite consensus disorder prediction 666 682 - -
Phco7g02162 1617 SMART TFS2_5 335 408 IPR003617 GO:0005634
Phco7g02162 1617 MobiDBLite consensus disorder prediction 552 609 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 634 682 - -
Phco7g02162 1617 Gene3D - 30 270 IPR043151 -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 821 836 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 637 665 - -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 189 255 - -
Phco7g02162 1617 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 317 420 IPR035441 -
Phco7g02162 1617 MobiDBLite consensus disorder prediction 225 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02162 Phco-Chr7 38343290 38349994 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco7g02162 BAH 1.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01751 5 53625823 53634163 Phco7g02162 7 38343290 38349994 ECH
Phco7g02162 7 38343290 38349994 Phco7g02162 7 38343290 38349994 ECH