Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02125 ATGGACATGGATATTGAGACATTGGTGAAAGAAAGCTTTGTCTCACAGCCCTTGCAAGAAAGCTGTATGAAAGATATGATTCCTTTGGGAAATCCTTCATCTCATGAACTCTTACAACAACATTTTCACCATATTGATGAGTTTCAATTCAGTGTGCCCTCATCCAATAATTCAACATTTCATGCTTTTCACAATTTCACCTTTACACCTTCATCACCTGATTTAGATGTATACGAGTGCAAGCCTTTTACTCATGTTATGGACAATTTCCTTTATGGAAATTCTCAAAGGAATATTGAACTAGATATCATGGTTTCAAATCAAAGCTTTTTGCCTTTTACTCCTCAACAAATCAAGCCCTCCAATTTTGTTTTACCAGATGAAGTTTCATGCATATCACCCATCAATTATTACAAAACAATTGGCGTTAACAAAAACCATAGATCCTATCCAACCACTCGAAGAACATTCAAAGTTCACAAGAAGTCCAACACAGTCAAGGGGCATTGGACAATAGAAGAAGATGGATTATTGATTCAACTGGTGGAACAATACGGGTTGAGGAAGTGGTCTCATATTGCTAAGATATTGCCGGGAAGAATTGGAAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGATATCAAGAAGGACACATGGAACTGTGAAGAGGATAAAATACTAATCGAAGCTCATGCTGAGATTGGTAACAAATGGGCAGAGATTGCTAAAAGGTTGCCTGGAAGAACTGAGAACTCGATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGCCGATCCAAGTACCCTAGAGGCACTCTTCTACAAGAGTATATCAAGAGCTTGAACTTAGACAAGAACCCCCCAAGAGATTATAGGAGAAAATCTTGTGCTAATTATGCTACTCCCATGAATATCAAAACCAGCACAAGCAAAGCCACTGCACCAGCTTTGCCCCAGACAGTTTTTCAATTTTGTGCCACTGAATGCTTGGCACCAAATTCTGATTTCAATGTGGTTCCAGATTTTCTCTTTGGTGAGAATTTGTTTGAAGAAGGATGCTGTATCGATTCTCTTCTAGATGGTGTGCCTTGTGTTCCTCTTGAGAATAACAAAATTTTTGAAGGAAAATTGCAATTTGATGGAATGATGGAGGGAATAAAACATTGTGGTTATGGAGGAATAGAGTGTGTTGCAGGTGTTAGTATGGATGAGAATGATGTTGAGAGAGATATGGCACTAGAGATGTTGGAGGTTGAAGTTAAGAAGGAGCTGGATTTGGTTGAGATGATCTCACAGATTAATAATGAAACTTTTTATGTGTAA 1350 0.3844 MDMDIETLVKESFVSQPLQESCMKDMIPLGNPSSHELLQQHFHHIDEFQFSVPSSNNSTFHAFHNFTFTPSSPDLDVYECKPFTHVMDNFLYGNSQRNIELDIMVSNQSFLPFTPQQIKPSNFVLPDEVSCISPINYYKTIGVNKNHRSYPTTRRTFKVHKKSNTVKGHWTIEEDGLLIQLVEQYGLRKWSHIAKILPGRIGKQCRERWHNHLRPDIKKDTWNCEEDKILIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPRDYRRKSCANYATPMNIKTSTSKATAPALPQTVFQFCATECLAPNSDFNVVPDFLFGENLFEEGCCIDSLLDGVPCVPLENNKIFEGKLQFDGMMEGIKHCGYGGIECVAGVSMDENDVERDMALEMLEVEVKKELDLVEMISQINNETFYV 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02125 449 PANTHER MYB PROTEIN-RELATED 150 310 - -
Phco7g02125 449 CDD SANT 170 213 IPR001005 -
Phco7g02125 449 Gene3D - 166 218 - -
Phco7g02125 449 FunFam Transcriptional activator Myb isoform A 166 219 - -
Phco7g02125 449 SMART sant 166 215 IPR001005 -
Phco7g02125 449 SMART sant 218 266 IPR001005 -
Phco7g02125 449 FunFam Transcription factor MYB119 220 284 - -
Phco7g02125 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 268 IPR017930 -
Phco7g02125 449 Gene3D - 220 281 - -
Phco7g02125 449 ProSiteProfiles Myb-like domain profile. 162 213 IPR001005 -
Phco7g02125 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 217 IPR017930 -
Phco7g02125 449 Pfam Myb-like DNA-binding domain 170 226 - -
Phco7g02125 449 CDD SANT 221 264 IPR001005 -
Phco7g02125 449 ProSiteProfiles Myb-like domain profile. 214 264 IPR001005 -
Phco7g02125 449 SUPERFAMILY Homeodomain-like 165 260 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02125 Phco-Chr7 37543170 37545170 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco7g02125 Myb_DNA-bind_6 2.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02125 7 37543170 37545170 Phco7g02125 7 37543170 37545170 ECH