Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02111 ATGAACTTGGTTTTTCCTTTTGAGAAACAAAAAGAAATGGAGAACAACCTCTACAACTTTCACTATTCAGCAACTTACTCAGACCAGTCAACAACAATGGCTCCACCTCCTACCTCTAAGTCTGTCTTTGGGAAGGAAGAGGATGTTTCAAAAGCACTTCGTGATAAAGTTGCTTCTCACCCTCTATTTCCTCACCTCCTCCATGCCTACATCGATTGCCACAAGGTGGGAGCGCCACAAGATATGGCAGACCTATTTGAAGGAATCAAAGGAGAGCCTAGTGGGGTGTGTCAGATATCTGACTCTAAATCTGATCATGGCTTCTTGGGTGCTGATCCCGAGCTTGATGATTTCATGGGAACGTTTTGCGATTTGTTGGTGAAGTACAAATCAGATCTTTCAAGACCCTTTAACGAGGCATCCATGTTCCTCAGCCACATGGAAACTCAGTTTCACTCCATCTGCAACGATCTTGCTGTCATAGACAACGCTCTTCCTCTACCTGCAGGTGATGTTGGTGGATCATCTGGGAAAGAAAGTATGGAGGAGATTAAGAGAATTGAAAGCAAGAAGACAAATGAGGTTCAAGAACTGAAGGATAATCTTCTAAGTAGATATAGTGGTTACATTACTAATCTGAAGCATGAATTTTCCAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGAAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGCTGATAAGGTTGCCCTAGCCGAATGGACTGGTTTGGAGCAGAAGCAAGTAAATAATTGGTTTATTAACCAAAGGAAACGACATTGGAAACCATCAGAAGAAATGCAGGTTGCAATTTTGGATGGACTCTATGGACCACTTCACGAGTGA 897 0.4192 MNLVFPFEKQKEMENNLYNFHYSATYSDQSTTMAPPPTSKSVFGKEEDVSKALRDKVASHPLFPHLLHAYIDCHKVGAPQDMADLFEGIKGEPSGVCQISDSKSDHGFLGADPELDDFMGTFCDLLVKYKSDLSRPFNEASMFLSHMETQFHSICNDLAVIDNALPLPAGDVGGSSGKESMEEIKRIESKKTNEVQELKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWNIHFKWPYPTDADKVALAEWTGLEQKQVNNWFINQRKRHWKPSEEMQVAILDGLYGPLHE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02111 298 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Phco7g02111 298 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Phco7g02111 298 SUPERFAMILY Homeodomain-like 219 290 IPR009057 -
Phco7g02111 298 SMART KNOX1_2 51 95 IPR005540 GO:0003677|GO:0005634
Phco7g02111 298 CDD homeodomain 233 281 IPR001356 GO:0003677
Phco7g02111 298 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Phco7g02111 298 Pfam KNOX1 domain 53 90 IPR005540 GO:0003677|GO:0005634
Phco7g02111 298 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Phco7g02111 298 SMART HOX_1 219 284 IPR001356 GO:0003677
Phco7g02111 298 Gene3D - 215 287 - -
Phco7g02111 298 SMART ELK_2 197 218 IPR005539 GO:0003677
Phco7g02111 298 Pfam ELK domain 197 218 IPR005539 GO:0003677
Phco7g02111 298 MobiDBLite consensus disorder prediction 27 46 - -
Phco7g02111 298 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Phco7g02111 298 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 55 285 - -
Phco7g02111 298 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Phco7g02111 298 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02111 Phco-Chr7 37143430 37158461 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco7g02111 KNOX2 1.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02111 7 37143430 37158461 Phco7g02111 7 37143430 37158461 ECH