Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02091 ATGGCATCATCCAGCTCCTACAATTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCCTTTCAGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAGAAGTTCGCCAACGTGCACAAGATATTCGGTGCTAGCAATGTGACGAAGCTTCTGAACGAGCTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCCCTTGCCTATGAAGCTGAGGCACGTGTGAGAGACCCCGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTTCAAAAGGAGCTTGATTCTGCCAATGCTGATCTCCTTCGCTATGCCTACAATGACATACCTCCACCCTCTCTTTCTGTGCCACCAGCAATGCCAGCAGCAACAATTCAACAAATGCCCCAAAGGTCTTTCTGTGCAAGGTTGGGAAATGAAGGAAGTGGGTTTTATAGGCCCTCTCCTACCACCACTTACAACTCCCTCCCTTATTCTCTTCCATGGACTGATACCCCTCCTGAGAATATCAACGATGGAAGAGGAGAAGAAGGAGGTTCTTTGGAAAGCACAGTGGGTATTATTGGGGGTGGTGTTTGTTTGATGAACTCAACTAACAGGAAAACGAGCAGTGTTTCTCTGAATCTGTGTCTGTGCTGCAATCAATCCGAACTTGTTTTGAATTGTAGTTTTCATCATGTACTGAGAAAAAGGCAAAGGTTAGTTCGCAATATGACAGTTATAATTTCAGAATCCATCAATCTTGGTCTGTCTGAACCATGCCAAGACGTGGAAAAGAAGCAAAGAGCAGGTGAAAAATGGCAGGGTGAGGTGAAGGTCTCTTACTGGTCTACAGTATTTGGCCATAAAGTGCTGCAAGCTTCACCTTTACTAGGTAATGTTAGTCATGGTGTCCAAACAAGGAGCAGCAGGTTGAGACATTCCTGA 954 0.4633 MASSSSYNSPCAACKFLRRKCLSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDIPPPSLSVPPAMPAATIQQMPQRSFCARLGNEGSGFYRPSPTTTYNSLPYSLPWTDTPPENINDGRGEEGGSLESTVGIIGGGVCLMNSTNRKTSSVSLNLCLCCNQSELVLNCSFHHVLRKRQRLVRNMTVIISESINLGLSEPCQDVEKKQRAGEKWQGEVKVSYWSTVFGHKVLQASPLLGNVSHGVQTRSSRLRHS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02091 317 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Phco7g02091 317 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 140 - -
Phco7g02091 317 Coils Coil 89 116 - -
Phco7g02091 317 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02091 Phco-Chr7 36660356 36666759 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco7g02091 LOB 3.1e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00574 8 5711378 5711893 Phco7g02091 7 36660356 36666759 ECH
Phco7g02091 7 36660356 36666759 Phco7g02091 7 36660356 36666759 ECH
Phco8g00574 8 5711378 5711893 Phco7g02091 7 36660356 36666759 PCT