Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02010 ATGTCTCTACTACTACTACTACTTACTCTACTTCTTAATTCTACTAACCCCTGTTTTGTTTTGCTTCATTCCTCTGCCCCAAAATTTTCTTATTCATTTCGTTTCTGTTTCCCTTCCTCTGGAAACAGGGGAAGAGACGCAAACACGAGGTCTGACCTCGCAGAGGCTTCAATGAGAGCCATGGAGAAGAAATCAGGGATAATGGGAGGGGGTTCGGAGGGAAACGCTGACGTTTTGCCGTGGCTGAAATCGATGCCGGTGGCGCCGGTGTACCGGCCGACTGCGGAGGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCGTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCTCCTTCCCCGAAGAAAACCGCCATCGCCAATCTCAACCGCTCACTTGCCGTTTCAGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGTCCCCGCCGCCCCCGTCCCGTGCAGCGTCCCGTCTGGCAGAGCGGCGATCACTACACCTTCACGGAGTTCGAGTCCAAAGCCAAGTCCTTCGAGAAAGCGTACCTCAAACGCCACACCAGAAAGGGCCCAGGCCCGACCCCGCTTGAGACCGAAACGCTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCAAATGACATGCCGGGTTCCGCGTTCTCCCCCAAATGCCGCCACGCGGGGGATCCCACCTCCCTGGCGGACACTCCGTGGAACATGCGAGCTGTTTCGCGGGCCACTGGTTCGCTCTTGCGCTTCATGAAGGAGGAGATTCCGGGCGTTACTTCTCCCATGGTCTACGTCGCCATGCTCTTCAGCTGGTTTGCGTGGCATGTCGAGGACCACGACTTGCACAGCTTGAACTACCTCCACATGGGCGCGGGCAAAACCTGGTACGGCGTCCCCCGTGACGCTGCCGTCGCTTTTGAGGAGGTTGTTAGGGTTCATGGCTACGGTGGAGAGATTAATCCGCTTGTTACATTTGCTATTCTTGGTGAGAAAACTACGGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCCGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATTGCGACGCCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCCATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGAGCGTCATTGCTGGGCCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAGAACAATGATCTGCTTCATATACTGGGGAAAGGATCTGCTGTAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTACTACGATGTATGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACTTAAGCACTTCAAGTTCTAAGCCACTTCAAAGGGACACTGAGGGAGAAACTAGTGAAGAAGATGGATTGTCAGATCAGAGACTGTTTTCATGTGTCACTTGTGGAATATTAAGCTTTTCTTGTGTTGCTATTGTACAGCCTAAAGATCCAGCAGCTAGATATCTCATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAGTAAATTTACTACTGCCCCTGAAGAAGCAACTATTCCTGTGCCAAATGTGTATACAGGATGGATGAAAAAAAATGTCCAAGATGGTATGCAAGATGTTTCTGTTCAATCTTCTCGGGATGCTTTAAATATTGAAAGTGAAAAGGGCAATACAGCTCTTGCACTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCGTATTTCAGTTGATGGTCATGAAACAAATGTGCTAAACTCTGCTTCTGAAAGTTTACTTTCTCATACTCAAGATTCCCATGCTAGTCCCATGCCTGCACTTGATAGCACAGATAATGTTCCTTCAAAGAGTGCCAGTTGTGTGGATTTAATGCATCATAGATTTGAGTGTAATTTGAGTCATCAATCTTTAGACCACTCTTTAAAGAAACAGGAGTATAATATCACATCAGGGGTAACATTTGAAAATATGAGGACGGTGCCTAATTCCACCTCCAATTGTTCCCAAGACGCCCATGATGCAGAAAGGTCATTGTCTAAAATGTCTATGGTTACCTTTGATAATAAGAATTCTTCCATGGTGTTACAATCTGATGAAGATTCATCCAGAATGCATGTGTTCTGTCTGGAGCATGCTGCAGAAGCAGAGAAGCAACTTCGCCCCATAGGTGGAGCCCACATATTTCTCCTTTGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAGTGGTGGCAGAAGATTTGGGGATTGATTACGCATGGAAAAGTATTGCATACAGGCATGCTTCCAAGGAGGATGGGGAGAGGATCCAGTCGGCTCTGGATAGCGAGGAAGCCATTCCTGGGAATGGTGACTGGGCTGTAAAACTAGGGATCAATCTCTTTTATAGCGCATATCTTAGTCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTGTGCATTTGGTTGTAGCTCTCCAGCTAACTCACCCGAAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAACCAGGTCCATCCCCTTTTAGCGAAAAGAGATTCTGAAGATGCTGAGGATGAGAAAATCTTACTTGAGTGGATATTACCTGATGCGAGAATTGAGAGATCAGGAAGTACCCCCAAAAGTGAAACTACTAGCAGAAAGTCAGGTAAGAAAAGGAAAATGACAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTAGTTTCATACAACTCAACTGAAGATAAACCCAACTCACAGCCAAGGAGGATTCATAGAAGTAAGAAAGCCAGGAATGTTGAGAGAGATCGTGCTGCTTTGAAAGGGGATACTTCTCCCTATCATCATAGAAAACCTATAAGCAAACAAACAAACTGTACTGAAAGTGATGCAGTTTCTGATGATTCAGTTGATGATGAAGATGATCACATGCAGCATGGGAGGAATTTTGACATTGACAATGATGTGGTTTCAAATGATACAGGGGACTGTGATTCTGATTGGCAGCAGAGGGAAGAGCATAGCAGCAAGGATGTTGAAGATATGGAGAGAGATGCAATTTCAGAGGATTCTTTAGATGTTGGTTCTCTTCAGCTGCAAAGGAAGACTTCTGAAGGCAAGCATGCCAAATGCATTAGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTTGTTTTCAGAAGCGGCAGAGGAGAACTCCTAAAAGCAGGCAAGCCAAGTATCTTAGTGGAAAAAATATAATATCTGACGACCAGCTAGAGCTGAAAATGCAGAAGGAGCGACGGAGGAATCCTAAAAACAGGCAAGCCAAATACCTCAATGAAGAGGATATTGCTTCAGATGACCAACTGGAGGGCCATTATCGTAGGTATCAAAGAAGGAATCCTAAAGGCAGGCAGGCCAAATGTGTAGCAGAGGAAGATGAAATGTCTGGTGACCAATTGGAGGATCATTGTCAGAAGCTGCAAACAAGTTACTCTAGGAAAAAGCAAAACAAAGGCATCGATAGAGAAGTTAAATATGTAATGTCTGATGATCAATTGGAGGATCATTTTCCAAAGCAGCAGAGAAGAATTCCTAAGAGCAGGCAAAACAAATACAGTGATAAAGAAGTTATGGATGACTCGGCTGAAAATAATTCTCGCGTGCTGCATAGAACTCCTAAAAGAAAGCAACCTAAATCCATGGACGAAGATGATTTGAATTCTGATGATGAAATGGAAGATGACCAGCAGCTGAGAAGAACTCTTAGAAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAACAAGCCAACTCCTTGCAAGCAAAAAGCCAGGCATCTCGGTCCATAAAGAGGGGGTCTCGGGTGCTTGTGAAATCAAAGATTCCTCAGCAAATAAAACCACGGAATAAGCAATCCAGTAACTCCCGAGAGTTTAGTTTACTGATGGAAGACGAGGAAGAAGGTGGACCAAGTACCCGCCTTAGGAAGAGAACCACAAAAGCTCAGGAGAGTGAAGGAAAATTGAAAGACAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTACAACTGCAAAGGTTTCAGTTGGTCATGCCAAAGGGAAGGATGGGGATGCAGATTATCAGTGTGATATTGATGGGTGCAGTATGAGCTTTGGATCAAAACAGGAGCTGCTGCATCACAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGGCGAGTTCATGAGGATGAGCGACCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTAGAGTCCACACTGGTGCACGGCCTTATGTATGTGCAGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCGGCGAAGAAGAGTCGTCAATAG 4944 0.4484 MSLLLLLLTLLLNSTNPCFVLLHSSAPKFSYSFRFCFPSSGNRGRDANTRSDLAEASMRAMEKKSGIMGGGSEGNADVLPWLKSMPVAPVYRPTAEEFQDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFTEFESKAKSFEKAYLKRHTRKGPGPTPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHAGDPTSLADTPWNMRAVSRATGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASVIAGPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKGFVSDDLVFNRSHGIKQEKSFYSVKDKFTTMYERNRISSFDVNGNLSTSSSKPLQRDTEGETSEEDGLSDQRLFSCVTCGILSFSCVAIVQPKDPAARYLMSADCSFFNDWVVGSGVSNSKFTTAPEEATIPVPNVYTGWMKKNVQDGMQDVSVQSSRDALNIESEKGNTALALLASAYGNSSDSEEDRISVDGHETNVLNSASESLLSHTQDSHASPMPALDSTDNVPSKSASCVDLMHHRFECNLSHQSLDHSLKKQEYNITSGVTFENMRTVPNSTSNCSQDAHDAERSLSKMSMVTFDNKNSSMVLQSDEDSSRMHVFCLEHAAEAEKQLRPIGGAHIFLLCHPDYPKIEAEAKVVAEDLGIDYAWKSIAYRHASKEDGERIQSALDSEEAIPGNGDWAVKLGINLFYSAYLSRSPLYSKQMPYNSVIYCAFGCSSPANSPEEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDAEDEKILLEWILPDARIERSGSTPKSETTSRKSGKKRKMTAENGRTRKGSYAKKNVVSYNSTEDKPNSQPRRIHRSKKARNVERDRAALKGDTSPYHHRKPISKQTNCTESDAVSDDSVDDEDDHMQHGRNFDIDNDVVSNDTGDCDSDWQQREEHSSKDVEDMERDAISEDSLDVGSLQLQRKTSEGKHAKCISEEDIISDDQMESCFQKRQRRTPKSRQAKYLSGKNIISDDQLELKMQKERRRNPKNRQAKYLNEEDIASDDQLEGHYRRYQRRNPKGRQAKCVAEEDEMSGDQLEDHCQKLQTSYSRKKQNKGIDREVKYVMSDDQLEDHFPKQQRRIPKSRQNKYSDKEVMDDSAENNSRVLHRTPKRKQPKSMDEDDLNSDDEMEDDQQLRRTLRSKQSKPKTLQQMKQANSLQAKSQASRSIKRGSRVLVKSKIPQQIKPRNKQSSNSREFSLLMEDEEEGGPSTRLRKRTTKAQESEGKLKDKQTKRKKVKNATTAKVSVGHAKGKDGDADYQCDIDGCSMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02010 1647 SUPERFAMILY beta-beta-alpha zinc fingers 1554 1590 IPR036236 -
Phco7g02010 1647 ProSitePatterns Zinc finger C2H2 type domain signature. 1616 1640 IPR013087 -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1324 1392 - -
Phco7g02010 1647 SMART JmjN_1 87 128 IPR003349 -
Phco7g02010 1647 SMART cupin_9 245 414 IPR003347 -
Phco7g02010 1647 SMART c2h2final6 1531 1553 IPR013087 -
Phco7g02010 1647 SMART c2h2final6 1584 1608 IPR013087 -
Phco7g02010 1647 SMART c2h2final6 1614 1640 IPR013087 -
Phco7g02010 1647 SMART c2h2final6 1554 1578 IPR013087 -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1416 1441 - -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1158 1183 - -
Phco7g02010 1647 FunFam Probable lysine-specific demethylase ELF6 1611 1640 - -
Phco7g02010 1647 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 1161 - -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 731 752 - -
Phco7g02010 1647 ProSiteProfiles Zinc finger C2H2 type domain profile. 1554 1583 IPR013087 -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1252 1509 - -
Phco7g02010 1647 Gene3D Cupin 81 418 - -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1470 1502 - -
Phco7g02010 1647 ProSiteProfiles JmjC domain profile. 245 414 IPR003347 -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1030 1186 - -
Phco7g02010 1647 ProSitePatterns Zinc finger C2H2 type domain signature. 1586 1608 IPR013087 -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 567 590 - -
Phco7g02010 1647 FunFam Probable lysine-specific demethylase ELF6 81 418 - -
Phco7g02010 1647 ProSiteProfiles Zinc finger C2H2 type domain profile. 1584 1613 IPR013087 -
Phco7g02010 1647 ProSitePatterns Zinc finger C2H2 type domain signature. 1556 1578 IPR013087 -
Phco7g02010 1647 SUPERFAMILY beta-beta-alpha zinc fingers 1594 1638 IPR036236 -
Phco7g02010 1647 Coils Coil 1492 1512 - -
Phco7g02010 1647 Pfam jmjN domain 89 122 IPR003349 -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1091 1116 - -
Phco7g02010 1647 Pfam JmjC domain, hydroxylase 278 396 IPR003347 -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1455 1469 - -
Phco7g02010 1647 FunFam Probable lysine-specific demethylase ELF6 1581 1610 - -
Phco7g02010 1647 Gene3D Classic Zinc Finger 1612 1646 - -
Phco7g02010 1647 Gene3D Classic Zinc Finger 1554 1582 - -
Phco7g02010 1647 Gene3D Classic Zinc Finger 1583 1611 - -
Phco7g02010 1647 SUPERFAMILY Clavaminate synthase-like 242 432 - -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1040 1060 - -
Phco7g02010 1647 MobiDBLite consensus disorder prediction 1252 1285 - -
Phco7g02010 1647 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Phco7g02010 1647 ProSiteProfiles Zinc finger C2H2 type domain profile. 1614 1645 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02010 Phco-Chr7 34443608 34453221 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco7g02010 JmjC 1.3e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02010 7 34443608 34453221 Phco7g02010 7 34443608 34453221 ECH
Phco7g02010 7 34443608 34453221 Phco8g00614 8 6160849 6168176 PCT