Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02009 ATGGAGCCCTCTGAATCCGAATCAGTTAGTTCCCCCACCAAGGACCCGCAATTGGGTGAACCTTCCACCCCTGTTCACCCACTCGATCATGATCCTCAACCCTCAGATCTCAATCACGTTGCCCAAGAGGATGCTGCACTTGGTGGGGAGCTTGAGGACAAGTTGGATTTGAAGGATGAGGTTGAGAGTGAGGATAAAGGTTCAAACTTGGAAGATGGGGGTGGAAATTTGAGTGATGAAGGTGCTGCCCCTGAAGGTGGTAAGGGAGAAGGGAGTGAGGACGATGGTGGTGGTGATGTTGTTGTTGTTGTTGATGATGATGATGATTGCAATGGGGGTGACGAGGGGTGTGATTGGATTGAGAATGTGAATGAGAGTGAAAGTGATAAGGTGAGTGGAGATGTCGAGGGAGTGGAGTGTAGGGATGGAAGGAGCAGTGGAAAAGCTCAACAGTACCCCTTGAGGCCTGAGGCTGAAGACTGTGCGTTTTATCTCAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCACTTAAGAGGAAAAACCAGGCTAAAAAAGAGAATGCGGGAGAAAAAGAAGAACAGGCAGAAAGATCAGGGCAGACGGAATGCAAGTATTATTTAAGATCTGGGGGGTGTAAGTTTGGAAAGGCTTGTAAGTTTAATCACACAAGGGGAATGTCTTCATCAGCATCCTCAATTGTAGAGCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACAGCTGGAGGAGGTGATTCTCCTTCTGGATATGGTAATGGAAGTTCTATTTCATTACAAGGTGTGTCACAATCATCTATATCCTCATGGTCTTCTTCTAGACCATTAAATGAATCCACTCCTTTTGTGCCGGTGATACTTTCAGCTAATCCTGTGGTTTCTCCTCAAAGTTCTGAATGGGATGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGCTATGGAAACAAATATTTATATGCACCATCAAAAACAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACAGGGGATTGCAAGTTTAAATCTAATTGTAAGTTTCACCATCCGAAGAATCGGATTGCAAGATTACCTCCATGCAGTCTTAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTCGGACCAGCTTGTAAGTTCGACCACCCACCACCCTCAACTATAAGTGGACTTGATCAACAGTCCTCATACACAAATTCTGCGAGTGTTGATGTGGCTGAAAATGGAGGTGTCAGTGATGGGAACCAACTGTCTCTATAA 1479 0.4449 MEPSESESVSSPTKDPQLGEPSTPVHPLDHDPQPSDLNHVAQEDAALGGELEDKLDLKDEVESEDKGSNLEDGGGNLSDEGAAPEGGKGEGSEDDGGGDVVVVVDDDDDCNGGDEGCDWIENVNESESDKVSGDVEGVECRDGRSSGKAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHTRGMSSSASSIVELNFLGLPIRVGEKECHYYMRTGSCKFGANCKFNHPDPTAGGGDSPSGYGNGSSISLQGVSQSSISSWSSSRPLNESTPFVPVILSANPVVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPAMETNIYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCSLSDKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTISGLDQQSSYTNSASVDVAENGGVSDGNQLSL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02009 492 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Phco7g02009 492 Gene3D - 137 191 - -
Phco7g02009 492 Gene3D - 340 419 - -
Phco7g02009 492 SUPERFAMILY CCCH zinc finger 428 455 IPR036855 GO:0046872
Phco7g02009 492 SUPERFAMILY CCCH zinc finger 389 413 IPR036855 GO:0046872
Phco7g02009 492 SUPERFAMILY CCCH zinc finger 250 276 IPR036855 GO:0046872
Phco7g02009 492 MobiDBLite consensus disorder prediction 123 143 - -
Phco7g02009 492 MobiDBLite consensus disorder prediction 1 149 - -
Phco7g02009 492 MobiDBLite consensus disorder prediction 99 115 - -
Phco7g02009 492 ProSiteProfiles Zinc finger C3H1-type profile. 430 458 IPR000571 GO:0046872
Phco7g02009 492 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Phco7g02009 492 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Phco7g02009 492 SMART c3hfinal6 202 229 IPR000571 GO:0046872
Phco7g02009 492 SMART c3hfinal6 251 276 IPR000571 GO:0046872
Phco7g02009 492 SMART c3hfinal6 430 457 IPR000571 GO:0046872
Phco7g02009 492 MobiDBLite consensus disorder prediction 46 69 - -
Phco7g02009 492 ProSiteProfiles Zinc finger C3H1-type profile. 202 230 IPR000571 GO:0046872
Phco7g02009 492 SUPERFAMILY CCCH zinc finger 154 183 IPR036855 GO:0046872
Phco7g02009 492 SUPERFAMILY CCCH zinc finger 205 229 IPR036855 GO:0046872
Phco7g02009 492 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Phco7g02009 492 Gene3D - 192 279 - -
Phco7g02009 492 Gene3D - 428 480 - -
Phco7g02009 492 MobiDBLite consensus disorder prediction 1 18 - -
Phco7g02009 492 PANTHER PROTEIN PHOSPHATASE RELATED 28 467 - -
Phco7g02009 492 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Phco7g02009 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 275 IPR000571 GO:0046872
Phco7g02009 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 159 181 IPR000571 GO:0046872
Phco7g02009 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 433 457 IPR000571 GO:0046872
Phco7g02009 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 386 411 IPR000571 GO:0046872
Phco7g02009 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 227 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02009 Phco-Chr7 34413818 34418147 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco7g02009 zf-CCCH 7e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00615 8 6174360 6178366 Phco7g02009 7 34413818 34418147 ECH
Phco7g02009 7 34413818 34418147 Phco7g02009 7 34413818 34418147 ECH
Phco8g00615 8 6174360 6178366 Phco7g02009 7 34413818 34418147 PCT