Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02007 ATGGGTGGCGAGGAAGAAGGAGTTTCTGTTTGTGCTGCCTGCATCCACAACTGTCTATTGTTCCACCAAACCAAACCAACTTCACCAACCTCTTTCTTCAAGTTCATCACTAGACAAGATTATTTAACAACTTTGTGTATTCCTCCTGCTTTTGGTAGTATTGTGGCCAACATGGTTAACAAGAAAATCAATCTCAATGATTCAAGTGGACAGCAGTGGAAGGTGAAAGTATCAGAAGTAAATGGTTCTTTTGTTTTTGGGGAGGGATGGAGTGGTTTCTCATTGGGTCTTGGGCTTAAAGTTGGATATCTTTTGGTATTCAATTATATTAAGGATTTGCACTTTGATGTCAAGATCTATGATACTTCTGCCTGTGAAAAGCTTGGTTTTTCTAAAAAAAGAGATCAGAAGAAAAGAAGTAGGGGCAAAATTGTCTCACCAGTTAGAGATGGTATCTTGGTCAGACAAGAACCCAATGCGCCGAAAATGAAAAGGCAGAGCAGCGAGGTTGACTTAGATTTGCCACAAAACGCTAAGGAGAGCGGCCAACTTATGCACATATCAAATCACTGTGAAGACCCATGTTATTCAAAAAGCCTAGAATTTGACCAGAGCCATGGTGATGACGAGACCATGAAAATTGAGAACGGAGCTTTAAAAGTTTCTAATGTTGATTATGAATCCAGTATATTTGAAAAGGATGCAATGACATGCAGTAAAGATACTATGTTTGAAGGGATATTCAGTACGGAAGTTGCCTTGGATATATCTGAACTCGAAAAATCTGGAAGAAGTGCTTCTCTAGGTGAGGCAGAGACAAGTACATATGGCAAGACTTCTAATTTGAAAATTGAAGAGAACAAAGCCATCTTGTCCAACATGGAAGCTCAAGAGTGCCAATTTTCCAAGGGCTTAGGTGAAATGAAGAAATTGCCTAAGGACATGACTCCCAACTTGGACAGTTCTATGGATGAATTGAATTTAACAGGTGAAGTGTCTAAACAGTTGAAGAAAGAGCTTGTAACTCTTATTGAATTGGAAGCAACAGGGTTGCCCACGGAAATTAAGGGACTGTTGGACTCTGACATATTTAATGAAGATAATGCGAGTCACTCTAAAACTACACACCTCTCCTGTGTGGTTCCTCATGATAATGTTTGCCTTAAATTGCCCAAATGCCCGCCTTTGATTCGCAAGGTAAAAGTAGATCAGCAAAGGAAGATGGTAGTATTTCTTCGGGACCCACTGAGGAGATTGTGGCCGGTCTTTTACCATGAAAAACCGCATTTACAATTACTGGCTCATGGATGGTTAGATTTTTGCAGAGCTAATAACATTCAAGCGAAAGATAAGTGTATTTTTGAGGCTGAGGTTGATCCTGAGTGCAAGTCTAAACATATCTTATCAGTTCATATAGTCCACAACAAGTGA 1431 0.3976 MGGEEEGVSVCAACIHNCLLFHQTKPTSPTSFFKFITRQDYLTTLCIPPAFGSIVANMVNKKINLNDSSGQQWKVKVSEVNGSFVFGEGWSGFSLGLGLKVGYLLVFNYIKDLHFDVKIYDTSACEKLGFSKKRDQKKRSRGKIVSPVRDGILVRQEPNAPKMKRQSSEVDLDLPQNAKESGQLMHISNHCEDPCYSKSLEFDQSHGDDETMKIENGALKVSNVDYESSIFEKDAMTCSKDTMFEGIFSTEVALDISELEKSGRSASLGEAETSTYGKTSNLKIEENKAILSNMEAQECQFSKGLGEMKKLPKDMTPNLDSSMDELNLTGEVSKQLKKELVTLIELEATGLPTEIKGLLDSDIFNEDNASHSKTTHLSCVVPHDNVCLKLPKCPPLIRKVKVDQQRKMVVFLRDPLRRLWPVFYHEKPHLQLLAHGWLDFCRANNIQAKDKCIFEAEVDPECKSKHILSVHIVHNK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02007 476 SUPERFAMILY DNA-binding pseudobarrel domain 28 125 IPR015300 -
Phco7g02007 476 SUPERFAMILY DNA-binding pseudobarrel domain 407 471 IPR015300 -
Phco7g02007 476 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Phco7g02007 476 Gene3D - 24 125 IPR015300 -
Phco7g02007 476 Pfam B3 DNA binding domain 397 459 IPR003340 GO:0003677
Phco7g02007 476 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
Phco7g02007 476 Gene3D - 360 476 IPR015300 -
Phco7g02007 476 PANTHER B3 DOMAIN-CONTAINING 28 456 - -
Phco7g02007 476 SMART B3_2 32 123 IPR003340 GO:0003677
Phco7g02007 476 SMART B3_2 376 476 IPR003340 GO:0003677
Phco7g02007 476 CDD B3_DNA 403 455 IPR003340 GO:0003677
Phco7g02007 476 CDD B3_DNA 31 121 IPR003340 GO:0003677
Phco7g02007 476 ProSiteProfiles B3 DNA-binding domain profile. 410 476 IPR003340 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco7g02007 B3 1.3e-11 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02007 7 34303830 34307365 Phco7g02007 7 34303830 34307365 ECH