LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g01981	ATGGCCGCTCTCACCTCTCTCTCCCTCTCTCTCCGTCCCCTCTCTCTCCGCCGCAAACCAACCACAGCAATCTCCGGTTCACTTTCTTCACTCCCAGGGAGCACCCATGGGTCTACAACCAAAGCGCCTCGGAGAAAAGCCAGGCGAATCGAAGGCCCTAGAAAGAGCATGGAGGACTCGGTTCAACGCAAGATGGAGCAGTTTTACGAAGGCTCCGATGGGCCTCCGCTTCGCGTTCTTCCCATTGGCGGTTTGGGGGAGATTGGGATGAACTGTATGCTCGTCGGCAACCATGACCGCTATATCCTCATCGACGCCGGTGTCATGTTTCCAGACTATGACGAACTTGGAGTTCAGAAGATTATACCTGACACCACTTTTATAAGAAAGTGGAGCCACAAAATTGAGGCGCTTGTCATAACACACGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCGGCATTGGATTCCAATACACCAATTTTTTCATCTTCCTTTACAAAGGAGCTTATAAACAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAAGTATTTAGAATGAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAGGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCAGTTGTGGCAGATGCTTTGTTGAGACATATTTCAGCTTCTAATGGAAGGGTCATTACCACCCAATTTGCATCAAATCTACATCGGCTCGGTAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCTGCCTTGAACCTTGCATCATTTGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATCTTGTTTTGTATTCCGCTAAGGTTATCCCGGGTAATGAATCTCGTGTGATGAAAATGCTAAACCGTGTATCAGAGATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTCATTAAGAATGGAGAGATGCTTGGTGTTACACATTTGAGAAATAGAAAAGTCCTTTCTAATGGTTTCATTTCCCTAGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGAGATAGAGCATTTGGTACATCAAGTGAACTCTTCATTGATGAAAGAATGAGAATCGCTTTAGATGGCATCATTGTTACTAGCATGGAAATATTCCGCCCTAAAATTTTAGGTAGTTTGGCTCCAAATACCTTAAAAGGGAAAATAAGGATTACCACAAGATGCTTATGGCTCGACAAAGGGAAGCTGATGGATGCACTCTACAAATCTGCCCATGCCGCTCTTTCAAGCTGCCCTGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTGTCAGAGGTATTGAGAAAGATGGTGAGGAAGTATAGTGGTAAACGGCCTGAAGTTATTTCCATTGCCATAGAAAATCCTGCATCCGCTATTGCTGATGAGATAAACACAAAATTGTCTGGCAAAACCCATGCGGGTCTTGGAATATCAACATCAAAAAGAGCAGTGGATAGACATGAGAAAGGAAATCAGCCCACCTCACTGCAAGTTACAGATGATAGTATTGATAATGTAAGTGGAGCTGAGGGTTATTTATCTGAGGAAGACAACACTGCAAGTGGAGCTGATGGTGATATATCCGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACACCATTACCCGTTGAGAAGCCATTTAGTGCTGACAATGCTTATGATTCACAAAAGGAGCATGCGTCCAATCTGAAGAAAGGTGATTCTAAGAACACTGATGAAGCCAAGTCTGAAGAAACGTCTACCTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAAAACTGATGAAGTTAAGAAGCTGATTGGTATGCGTGCAGAACTACATGACAGATTTCAAATTGTGAAGGGTAGGATGGCCCTCTGGGAAGAGATATCTCAAAAACTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATAGAGGACATGGAAAGGATACTGTCTGATAAAGAAGCTCCTGCAACAAAATGA	2616	0.4274	MAALTSLSLSLRPLSLRRKPTTAISGSLSSLPGSTHGSTTKAPRRKARRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFSSSFTKELINKRLKEHGIFVPSRLKVFRMRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASNGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRVSEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVTHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERMRIALDGIIVTSMEIFRPKILGSLAPNTLKGKIRITTRCLWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVISIAIENPASAIADEINTKLSGKTHAGLGISTSKRAVDRHEKGNQPTSLQVTDDSIDNVSGAEGYLSEEDNTASGADGDISESEDSDEFWKPFITPLPVEKPFSADNAYDSQKEHASNLKKGDSKNTDEAKSEETSTSEPKSSKSVKRNKWKTDEVKKLIGMRAELHDRFQIVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSKKSWPYIEDMERILSDKEAPATK	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g01981	871	MobiDBLite	consensus disorder prediction	22	61	-	-
	Phco7g01981	871	ProSiteProfiles	Myb-like domain profile.	772	836	IPR001005	-
	Phco7g01981	871	Gene3D	-	278	428	IPR042173	-
	Phco7g01981	871	MobiDBLite	consensus disorder prediction	742	778	-	-
	Phco7g01981	871	SMART	Lactamase_B_5a	89	286	IPR001279	-
	Phco7g01981	871	Gene3D	-	780	840	-	-
	Phco7g01981	871	PANTHER	RIBONUCLEASE J	1	871	-	-
	Phco7g01981	871	MobiDBLite	consensus disorder prediction	730	778	-	-
	Phco7g01981	871	Pfam	Zn-dependent metallo-hydrolase RNA specificity domain	434	471	IPR011108	-
	Phco7g01981	871	MobiDBLite	consensus disorder prediction	652	716	-	-
	Phco7g01981	871	SUPERFAMILY	Metallo-hydrolase/oxidoreductase	77	491	IPR036866	-
	Phco7g01981	871	Gene3D	-	81	493	IPR036866	-
	Phco7g01981	871	MobiDBLite	consensus disorder prediction	22	40	-	-
	Phco7g01981	871	CDD	GT1	778	843	-	-
	Phco7g01981	871	Pfam	Metallo-beta-lactamase superfamily	90	234	IPR001279	-
	Phco7g01981	871	MobiDBLite	consensus disorder prediction	672	686	-	-
	Phco7g01981	871	Pfam	Myb/SANT-like DNA-binding domain	777	861	IPR044822	-
	Phco7g01981	871	CDD	RNaseJ_MBL-fold	80	491	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g01981	Phco-Chr7	33641417	33650968	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Phco7g01981		Lactamase_B	7.6e-09	CL0381

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g01981	7	33641417	33650968	Phco7g01981	7	33641417	33650968	ECH
	Phco8g00636	8	6351779	6367805	Phco7g01981	7	33641417	33650968	PCT