Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01981 ATGGCCGCTCTCACCTCTCTCTCCCTCTCTCTCCGTCCCCTCTCTCTCCGCCGCAAACCAACCACAGCAATCTCCGGTTCACTTTCTTCACTCCCAGGGAGCACCCATGGGTCTACAACCAAAGCGCCTCGGAGAAAAGCCAGGCGAATCGAAGGCCCTAGAAAGAGCATGGAGGACTCGGTTCAACGCAAGATGGAGCAGTTTTACGAAGGCTCCGATGGGCCTCCGCTTCGCGTTCTTCCCATTGGCGGTTTGGGGGAGATTGGGATGAACTGTATGCTCGTCGGCAACCATGACCGCTATATCCTCATCGACGCCGGTGTCATGTTTCCAGACTATGACGAACTTGGAGTTCAGAAGATTATACCTGACACCACTTTTATAAGAAAGTGGAGCCACAAAATTGAGGCGCTTGTCATAACACACGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCGGCATTGGATTCCAATACACCAATTTTTTCATCTTCCTTTACAAAGGAGCTTATAAACAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAAGTATTTAGAATGAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAGGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCAGTTGTGGCAGATGCTTTGTTGAGACATATTTCAGCTTCTAATGGAAGGGTCATTACCACCCAATTTGCATCAAATCTACATCGGCTCGGTAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCTGCCTTGAACCTTGCATCATTTGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATCTTGTTTTGTATTCCGCTAAGGTTATCCCGGGTAATGAATCTCGTGTGATGAAAATGCTAAACCGTGTATCAGAGATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTCATTAAGAATGGAGAGATGCTTGGTGTTACACATTTGAGAAATAGAAAAGTCCTTTCTAATGGTTTCATTTCCCTAGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGAGATAGAGCATTTGGTACATCAAGTGAACTCTTCATTGATGAAAGAATGAGAATCGCTTTAGATGGCATCATTGTTACTAGCATGGAAATATTCCGCCCTAAAATTTTAGGTAGTTTGGCTCCAAATACCTTAAAAGGGAAAATAAGGATTACCACAAGATGCTTATGGCTCGACAAAGGGAAGCTGATGGATGCACTCTACAAATCTGCCCATGCCGCTCTTTCAAGCTGCCCTGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTGTCAGAGGTATTGAGAAAGATGGTGAGGAAGTATAGTGGTAAACGGCCTGAAGTTATTTCCATTGCCATAGAAAATCCTGCATCCGCTATTGCTGATGAGATAAACACAAAATTGTCTGGCAAAACCCATGCGGGTCTTGGAATATCAACATCAAAAAGAGCAGTGGATAGACATGAGAAAGGAAATCAGCCCACCTCACTGCAAGTTACAGATGATAGTATTGATAATGTAAGTGGAGCTGAGGGTTATTTATCTGAGGAAGACAACACTGCAAGTGGAGCTGATGGTGATATATCCGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACACCATTACCCGTTGAGAAGCCATTTAGTGCTGACAATGCTTATGATTCACAAAAGGAGCATGCGTCCAATCTGAAGAAAGGTGATTCTAAGAACACTGATGAAGCCAAGTCTGAAGAAACGTCTACCTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAAAACTGATGAAGTTAAGAAGCTGATTGGTATGCGTGCAGAACTACATGACAGATTTCAAATTGTGAAGGGTAGGATGGCCCTCTGGGAAGAGATATCTCAAAAACTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATAGAGGACATGGAAAGGATACTGTCTGATAAAGAAGCTCCTGCAACAAAATGA 2616 0.4274 MAALTSLSLSLRPLSLRRKPTTAISGSLSSLPGSTHGSTTKAPRRKARRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFSSSFTKELINKRLKEHGIFVPSRLKVFRMRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASNGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRVSEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVTHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERMRIALDGIIVTSMEIFRPKILGSLAPNTLKGKIRITTRCLWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVISIAIENPASAIADEINTKLSGKTHAGLGISTSKRAVDRHEKGNQPTSLQVTDDSIDNVSGAEGYLSEEDNTASGADGDISESEDSDEFWKPFITPLPVEKPFSADNAYDSQKEHASNLKKGDSKNTDEAKSEETSTSEPKSSKSVKRNKWKTDEVKKLIGMRAELHDRFQIVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSKKSWPYIEDMERILSDKEAPATK 871
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01981 871 MobiDBLite consensus disorder prediction 22 61 - -
Phco7g01981 871 ProSiteProfiles Myb-like domain profile. 772 836 IPR001005 -
Phco7g01981 871 Gene3D - 278 428 IPR042173 -
Phco7g01981 871 MobiDBLite consensus disorder prediction 742 778 - -
Phco7g01981 871 SMART Lactamase_B_5a 89 286 IPR001279 -
Phco7g01981 871 Gene3D - 780 840 - -
Phco7g01981 871 PANTHER RIBONUCLEASE J 1 871 - -
Phco7g01981 871 MobiDBLite consensus disorder prediction 730 778 - -
Phco7g01981 871 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Phco7g01981 871 MobiDBLite consensus disorder prediction 652 716 - -
Phco7g01981 871 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Phco7g01981 871 Gene3D - 81 493 IPR036866 -
Phco7g01981 871 MobiDBLite consensus disorder prediction 22 40 - -
Phco7g01981 871 CDD GT1 778 843 - -
Phco7g01981 871 Pfam Metallo-beta-lactamase superfamily 90 234 IPR001279 -
Phco7g01981 871 MobiDBLite consensus disorder prediction 672 686 - -
Phco7g01981 871 Pfam Myb/SANT-like DNA-binding domain 777 861 IPR044822 -
Phco7g01981 871 CDD RNaseJ_MBL-fold 80 491 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco7g01981 Phco-Chr7 33641417 33650968 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco7g01981 Lactamase_B 7.6e-09 CL0381
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01981 7 33641417 33650968 Phco7g01981 7 33641417 33650968 ECH
Phco8g00636 8 6351779 6367805 Phco7g01981 7 33641417 33650968 PCT