Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01951 ATGTCAGGCAACCAGTGGTCGGTGAAGGAAGAAGTGAGCATCATACTGTTGCTCTTCTCACATATAGAAGGTAACCATACAAAGCGGGACTGTGGAGAAGTAGAAGGGTGGGGAGGGGGTTGGAATTTTATTTTTCTCTATTATTTTGTTATGGACTGGAATTTGAAAGCAGCTTCTTGGGATTTGGTGGATGTGGATAAGGCTTCCATACCCAACATAGACTCAATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCAGCATTAACCAAGTCCAAAGACGTTGCTGCTGGTGCTGGAGTCTCCAAAGTGGCATCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTGACTGTTTCATGCCTAGTGGACGGGTGCAATTCAGATCTTAGCAACTGTAGAGATTACCATAGGCGACATAAGGTGTGTGAACTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAGCAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAACAGACGAAGAAGAAAGCCTCAGCCAGAACCTCACACGCGACCTGGTAGTTTTTTATCGAATTACCAAGGTACTCAATTGCTACCCTTCTCAAATCCACACGTGTATCATTCCACTGCCATGATGAGCCCCCCATGGAATGGAGGACTTGTGACTTCCTCTGCAGATGCTAGGTTGCACAACCAGCACCACCATCAAGTGCACTTGGTTGATAAACAAGACCTTTTTCTTGGATCTTCCCACAAAGAAGGGAAGCAATTGGCATTCGTACACGGTAACCATCCCTCCACAGGTGCACTCAGCAATCAAACCCTTCCCTTTCCGTCTCCTTCTGTGTGCCACTCGCTTCTCAGGACCAGCCCTTTATCAGAAACTTGTGGAGTGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGGGAATGGTTTGAACCAAATGGTGCAGCCTCCCTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGCCTGCAGGATAACAGCAACTTAGAGTCTGTGGAACGAGTGTTGGTTCCCAGTGGCAGTGACCACTGTTCCTCCATGTATAGCCTGGGTTCTGATGGATCTCACTGCAATGAAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1335 0.4749 MSGNQWSVKEEVSIILLLFSHIEGNHTKRDCGEVEGWGGGWNFIFLYYFVMDWNLKAASWDLVDVDKASIPNIDSMEEHNRFGVYRMEGEFSVDLKLGHVGNSGTESALTKSKDVAAGAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPHTRPGSFLSNYQGTQLLPFSNPHVYHSTAMMSPPWNGGLVTSSADARLHNQHHHQVHLVDKQDLFLGSSHKEGKQLAFVHGNHPSTGALSNQTLPFPSPSVCHSLLRTSPLSETCGVRSKMFCESLTTTNSVHDTPCALSLLSSSQTHTPGNGLNQMVQPPSMSLMQPLGLSLQDNSNLESVERVLVPSGSDHCSSMYSLGSDGSHCNEAPQLFPFQWE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01951 444 Gene3D - 139 208 IPR036893 GO:0003677|GO:0005634
Phco7g01951 444 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 102 437 IPR044817 GO:0003677
Phco7g01951 444 FunFam Squamosa promoter-binding-like protein 14 138 208 - -
Phco7g01951 444 SUPERFAMILY SBT domain 145 226 IPR036893 GO:0003677|GO:0005634
Phco7g01951 444 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Phco7g01951 444 MobiDBLite consensus disorder prediction 209 223 - -
Phco7g01951 444 Pfam SBP domain 147 220 IPR004333 GO:0003677
Phco7g01951 444 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01951 Phco-Chr7 32192387 32196172 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco7g01951 SBP 4.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01951 7 32192387 32196172 Phco7g01951 7 32192387 32196172 ECH
Phco4g03248 4 53154131 53156580 Phco7g01951 7 32192387 32196172 PCT