Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01935 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTGGTTGACCCTGCATTCTTCCCCACCAACATGAACACCCCTTCTTCTCCTCCTCCTCCCCAGTTTCACCTCCCTCAGGAAACATCTTTTAATGTCACAAACCAGGAGACTAGCTGTGTTGACCAAAGCTCCAAGATCACCATCAGTGACAATGAGCCTTCTGTCACTAAAAACCTTAGCCCTCAGTCCTCTGTGGTGGTGGACAAGCTTGAAAACGGCGAGCAGGTCACTCAGAAGGTGCACACTCCTGTGGAGAAGAAAAGGAGAAGCAGAAATGGATCTTCCTTGACTACTAACACTCAATCCAAGGATACTGCAGCAGAAGGAAGAACCAAGAAACAAAGAAAGAACAATGGTGGGGTGAAAGAAGAGGACAAGGCAAAAGTAGAGAAGGAGCAGAGAAAATGTCCTGAAGAGCCCCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCCGTGAATCCCATGTTTTATGACTTGTCAACGGACATAGACACCCACTTGGTTAGATCAGAGAAACTAAATAGCATGGCATCACCATCACCACTACCATGTGTGTCACATTGCAACAGCTCCAACCAAGCCACAACTTTTGCTGATACAACCACCATGACCCCCACCAACATCTTTCACAATGCTAGTGACTATCTTTTGGATAACTCAACTTCATTTTTTCTTCAAGGGCAGAGGTCAACTATGTTCTCTGAGGAGGATACCGGTAGTCATCTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1029 0.4548 MAAFSYQYHPFLVDPAFFPTNMNTPSSPPPPQFHLPQETSFNVTNQETSCVDQSSKITISDNEPSVTKNLSPQSSVVVDKLENGEQVTQKVHTPVEKKRRSRNGSSLTTNTQSKDTAAEGRTKKQRKNNGGVKEEDKAKVEKEQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLSTDIDTHLVRSEKLNSMASPSPLPCVSHCNSSNQATTFADTTTMTPTNIFHNASDYLLDNSTSFFLQGQRSTMFSEEDTGSHLWDAEDQRQKFLHPYGFSNNLCSFH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01935 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 45 276 IPR024097 GO:0006355
Phco7g01935 342 Gene3D - 161 234 IPR036638 GO:0046983
Phco7g01935 342 MobiDBLite consensus disorder prediction 36 90 - -
Phco7g01935 342 CDD bHLH_AtBPE_like 154 239 - -
Phco7g01935 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Phco7g01935 342 SMART finulus 170 220 IPR011598 GO:0046983
Phco7g01935 342 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Phco7g01935 342 MobiDBLite consensus disorder prediction 117 154 - -
Phco7g01935 342 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Phco7g01935 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983
Phco7g01935 342 MobiDBLite consensus disorder prediction 22 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01935 Phco-Chr7 28150839 28152784 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco7g01935 HLH 1.9e-06 No_clan