Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01887 ATGGCTCCTCCCAGAGGTCGCGGTGGTTCTGGTGGTGGATTCAGGGGTGGTAGGGGTGACAGAGGTAGAGGAAGAGGTGGTGGAGGAAGAGGTGGAGACAGGGGTACACCCTTCAAAGCTAGAGGTGGAGGCAGAGGTGGTGGTGGCCGTGGGGGCGGCAGGGGTGGTGGCCGTGGTGGTGGCAGGGGTGGTGGCCGTGGTGGTGGCAGGGGTGGAATGAAGGGTGGTAGCAAAGTCGTGGTTCAGCCACATAGACATGGAGGAATTTTCATTGCTAAGGGTAAAGAAGACGCACTTGTCACTAAGAATCTTGTTCCTGGCGAAGCTGTTTACAATGAAAAAAGGATAACTGTCCAGAATGAAGATGGTTCCAAAGATGAATACAGAATTTGGAATCCTTTCCGTTCAAAGTTGGCTGCGGCAATCCTTGGTGGAGTTGACAACATCTGGATTAAACCTGGAGCCAGAGTCCTTTACTTGGGAGCTGCTTCTGGGACAACTGTTTCTCACGTGTCTGACGTTGTTGGCCCTTCAGGAGTTGTCTATGCAGTAGAGTTTTCTCATAGAAGTGGTCGTGATTTGGTCAACATGGCAAAAAAACGTACAAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCTAAATACAGAATGTTGGTTGGAATGGTTGATGTCATTTTTTCTGATGTTGCACAGCCTGATCAGGCAAGGATTTTGGGATTGAATGCTTCGTATTATCTCAAAGCAGGAGGACATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCCACAGTCCCTGCTGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTGAAGGCAGATCAATTCAAACCATTCGAGCAAGTCACCCTTGAACCATTTGAGAGGGACCATGCCTGTGTGGTTGGTGGATACAGAATGCCCAAGAAGAAAAAAGATGCTGCTTAG 954 0.4811 MAPPRGRGGSGGGFRGGRGDRGRGRGGGGRGGDRGTPFKARGGGRGGGGRGGGRGGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHGGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGSKDEYRIWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPSGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01887 317 Pfam Fibrillarin 81 308 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 SMART Fibrillarin_2 81 309 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 Gene3D Vaccinia Virus protein VP39 132 309 IPR029063 -
Phco7g01887 317 PRINTS Fibrillarin signature 99 118 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 PRINTS Fibrillarin signature 154 175 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 PRINTS Fibrillarin signature 286 307 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 PRINTS Fibrillarin signature 127 146 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 PRINTS Fibrillarin signature 179 196 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 PRINTS Fibrillarin signature 204 233 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 PRINTS Fibrillarin signature 234 263 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 FunFam Fibrillarin like 1 132 309 - -
Phco7g01887 317 Gene3D Phosphorylase Kinase; domain 1 76 131 - -
Phco7g01887 317 MobiDBLite consensus disorder prediction 1 78 - -
Phco7g01887 317 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 79 305 IPR029063 -
Phco7g01887 317 FunFam Fibrillarin like 1 76 131 - -
Phco7g01887 317 ProSitePatterns Fibrillarin signature. 179 193 IPR020813 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 10 313 - -
Phco7g01887 317 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 95 308 IPR000692 GO:0003723|GO:0006364|GO:0008168
Phco7g01887 317 PIRSF Nop17p 47 311 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01887 Phco-Chr7 22154364 22157283 Dispersed