Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01885 ATGCAAATGCAAATGCTGTTTGCTTGCATCCAATTCAATTCCAATCGCCTCCGTCCATCAACACATCCATCCATCAAGCGCTGCCCGTTAATAGCACGACAGGGCCATTTCCCAATAAAAACAGAACAACTTTCCTGCGACCGTCACGACACACGCCGTTACTTGCCAATCCAATCCCCTCTCGACACCGCGTTAACGCCGTCTGTACCCCTCTCTGTCCCCAGCCGCCTTTATTTATGGATCCTCCTTACCCCCTCTACTCGGTCAGGGACCCCACACTTACCCACAACTGCCGGTTTCCTCCTCGCAGATTGCACACGCTTCTTCTTCTTCTTCTTCTTCATCATCATCTTCTTCTTCTTCTTCTTCTTCGCCGGAACAACCAGATTGTGGAATTTCGTCTGCAAGCACGGCTCAAGTGTTTGTTGGCCAGCACTTCTCTCACCTCTTGGCTTCGAGCTTAGCCTGTTGAGTGTATTTGAGTTTCTCTCTGTGTTTCTCCTTGCGAAGGCCTTCTACGACTACGTCAGGAGTGTTGCGGATGAGAGATCTGTGGTGAGGTCTGTGGAAATGGCATCATCCGAGGTGACGATGAAGGGAAATTGCTTGAACCATATCGACGGCGGAGCTGCGGAGGCTCAGTCGCCGGCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCGTGTGCTGGTCCTCTCGTGACCGTGCCGCGCGAAGGAGAGCGCGTGTTTTATTTTCCTCAGGGACATATCGAGCAGGTTGAGGCGTCGACGAATCAGGTGGCGGACCAGCACATGCCCGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTCGCTCAGGTCACCTTGCTTCCGGAGCCAAATCAAAATGAGAATGACGTGGAGAAAGAGCCGCCACCGCCTCCGCCTCCGCGGTTTCACGTTCATTCTTTCTGTAAAACCCTGACAGCGTCCGATACCAGTACCCATGGTGGGTTTTCCGTGCTGAGACGGCATGCTGATGAATGCCTTCCCCCTCTGGATATGTCGAAGCAGCCACCTACTCAGGAATTGGCAGCAAAGGATCTTCATGCGAACGAATGGCGATTTAAACATATCTTTCGGGGTCAACCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGTTCCAAAAGGCTTGTCGCTGGGGATGCGTTTATATTTCTTAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTTATCTCCAGTCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACAATCTTCACTGTCTATTACAAACCTAGGACTAGTCCAGCTGAATTCATTGTTCCGTATGATCAATATATGGAGTCCCTCAAAAACAGTTATAGCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCCCCAGAGCAGAGGTTTACTGGTACAATTGTTGGAATAGAAGATTCTGATCCCAACAGGTGGAGGGAATCTAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACCCCTCGTCCTGAGAGGGTTTCCCCTTGGAAAATAGAGCCCGCTCTGGCGCCTCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAATTCCGCCTTCCCCCGATTCTTCTGTCCTTACTCGAGAAGCATCATCTAAAGTAAGCATAGACCCTTCACAGGCAAATGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCTGAAAGCATTGACTCTGATGCCGCTGAGAAATCTGTTGTTTGGCCACCTGCTGCAGTAGATGATGAAAAGATGGATGTTTCTACGTCAAGGAGGTATGGGTCGGAGAGCTGGATGTCAATGGGAAGAAACGAGCCTACATATTCTGATCTTCTTTCAAGCTTTGGGGCCGGTGGGGATTCTTCTCATTCATCCTTCATGGATCAGATGAGCCCTGTTCCTTTTCCCACTAGAAAGCAATCGTCGGATCACGAAGGCAAACTTCACATGCCTCAGCCGTGGCCTGTAATGCCCTCTAGTCTTTCATTGAATATATTGGACTCTAATACAAAAGGTCCTGCACATGGTGGTGATCCAACTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCACTGCATGGTCATAAAGTTGAGCATTCACATGGAAACTTGATGCCACCCCCACCTGCACCTGTCAATCAATATCAGAGTCCTTGTTCAAGAGAACTTATGTTAAAACCAGTGTCAGCAAAAACATTTGAGGCTGTGAAGTTAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTATTGTACCAGAGCCTCCTGTATCCCAAAGAAATGTGAACGAACCTACTGGTCAGATGCATCTTACGCCACACCAACAAAGAACATCCGAAAATGATGAGAAGTCAGACCACTCAAAGGGCTCAAAAACTGCAGATGATCTAATTGTTGATGACCATGATAGACCATTACAGGCTTCTCAGCTGCATGCGAAAGATGGTCAAGCCAAACCCCTCAGTAGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTCGGTCAGTGGACCTCACAAAGTACACTGGCTATGATGATTTAGTAGCTGAATTGGATCAGCTGTTTGAATTTGAGGGAGAATTATTGTCGACTAAAAAAGATTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGACCCATGGCAGGAATTCTGTGCCATGTGA 2934 0.4874 MQMQMLFACIQFNSNRLRPSTHPSIKRCPLIARQGHFPIKTEQLSCDRHDTRRYLPIQSPLDTALTPSVPLSVPSRLYLWILLTPSTRSGTPHLPTTAGFLLADCTRFFFFFFFIIIFFFFFFFAGTTRLWNFVCKHGSSVCWPALLSPLGFELSLLSVFEFLSVFLLAKAFYDYVRSVADERSVVRSVEMASSEVTMKGNCLNHIDGGAAEAQSPATAKDAEAALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQNENDVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHANEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNSYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPNRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAIPPSPDSSVLTREASSKVSIDPSQANGFPRVLQGQEFSTLRGNFAESIDSDAAEKSVVWPPAAVDDEKMDVSTSRRYGSESWMSMGRNEPTYSDLLSSFGAGGDSSHSSFMDQMSPVPFPTRKQSSDHEGKLHMPQPWPVMPSSLSLNILDSNTKGPAHGGDPTYQARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPPAPVNQYQSPCSRELMLKPVSAKTFEAVKLKDGDCKLFGFSLISGPIVPEPPVSQRNVNEPTGQMHLTPHQQRTSENDEKSDHSKGSKTADDLIVDDHDRPLQASQLHAKDGQAKPLSSSARSCTKVHKKGIALGRSVDLTKYTGYDDLVAELDQLFEFEGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAM 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01885 977 MobiDBLite consensus disorder prediction 837 853 - -
Phco7g01885 977 ProSiteProfiles PB1 domain profile. 904 977 IPR000270 GO:0005515
Phco7g01885 977 FunFam Auxin response factor 495 567 - -
Phco7g01885 977 MobiDBLite consensus disorder prediction 568 584 - -
Phco7g01885 977 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 225 977 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco7g01885 977 SMART B3_2 332 434 IPR003340 GO:0003677
Phco7g01885 977 FunFam Auxin response factor 330 434 - -
Phco7g01885 977 Pfam Auxin response factor 458 540 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco7g01885 977 Gene3D - 329 434 IPR015300 -
Phco7g01885 977 MobiDBLite consensus disorder prediction 566 611 - -
Phco7g01885 977 CDD B3_DNA 330 432 IPR003340 GO:0003677
Phco7g01885 977 ProSiteProfiles B3 DNA-binding domain profile. 332 434 IPR003340 GO:0003677
Phco7g01885 977 Gene3D - 900 977 - -
Phco7g01885 977 Pfam AUX/IAA family 945 975 IPR033389 -
Phco7g01885 977 SUPERFAMILY DNA-binding pseudobarrel domain 328 461 IPR015300 -
Phco7g01885 977 Gene3D - 495 565 - -
Phco7g01885 977 MobiDBLite consensus disorder prediction 585 611 - -
Phco7g01885 977 MobiDBLite consensus disorder prediction 702 722 - -
Phco7g01885 977 Pfam B3 DNA binding domain 332 433 IPR003340 GO:0003677
Phco7g01885 977 SUPERFAMILY CAD & PB1 domains 904 975 - -
Phco7g01885 977 MobiDBLite consensus disorder prediction 830 877 - -
Phco7g01885 977 MobiDBLite consensus disorder prediction 854 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01885 Phco-Chr7 22053509 22058305 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco7g01885 B3 5.7e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01885 7 22053509 22058305 Phco7g01885 7 22053509 22058305 ECH
Phco4g03206 4 52779945 52783802 Phco7g01885 7 22053509 22058305 PCT
Phco7g01885 7 22053509 22058305 Phco8g00648 8 6473697 6475691 PCT