LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g01884	ATGATGTCCAGAATCAACAGCGTTGGTTGGATGGAGGAACGTGAAGACCAGAACAACTCCGCTTCTTGGGCCAGAAACAAGCCCAACAACACCATCATAGCCACCGACACAACAACCACATCAAAACCAACAGCAGCAGCAGCTTTCGTAGAAAACAACACTACCCGCGACGACTTAGCATCTCTCTGCGCCTTCAAACCCATGCTGGAACTGGACGACGAATGGTACATCAGCAGCCACCACCAGCATAACAACCACCACCCCCAAGACATGACCTTCTCCCCCACCTTCCCCGACTCCGACAACCTCCTCCTCCCCGCCGTAGACTCCTCCTCCTCCTCCTCCGTCTTCACAAACCTCGACCCTTCCTCCTCCCACCTCCACTACTTCCTCCCTCCCAAGCCTCCCACTCTCTCTTCCCTCCTCAACCCCTTCGATATCCCCTTTCTTGACCCTCAAGCTTCCTCATCCTTCCCGCTTCTTCCCTCTACCCATTTCCCCTCCGACACGCCTCCTCAGACCGCCACCGCCACCGCCTTCGCCGGCTTCCACAGCCTCGACGACGGCTCCTCCAAGCCTCTCTTTCACCACCGCTCGAAGATTCTGCGGCCCCTGGAGTCCCTGACTCCCTCCGGGGCGCCACCCACGCTCTTTCAGAAGAGGGCGGCGCTGAGGAAGAACATGTCTAGTGGGGAAGGGAGTGAGAAGAAGAGGAAGGAGAGGGAGGAGGTGGTGGAGGATGTGAGTTTTGATGGGTCTGGATTGAATTATGATTCCGATGATTTGACTGAGATTAATAACAATGGTGGTAAGGTGGATGACGGTAGTGCTAAGAAGGGTGGGAACAGTTCCAATGCCAACAGCAGCGTGACTGGGTTGGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCAGAACGACGGCGTAGGAAGAAGCTCAATGATCGACTCTACATGCTTAGGTCCGTTGTTCCTAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATCGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAACGAGTTGGAGTCTACATCGGCGGCTTCTTCCCTCACTCCTTCCTCCAATTTCCATCCCTTGACGCCTACTCCTCCCACCCTGCCTAGTCGTATCAAAGAAGAATTGTGCCCCACCTCATTGCCAAGCCCCAATGCTCAACCTGCTAGGGTTGAAGTTCGGCTACGCGAAGGAAGGGCTGTTAACATCCATATGTTTTGTGCCCGCAAGCCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAGATCAAAGCAGTTCTCTTGGATTCAGCTGGCTACAGTGGCATGATGTAA	1479	0.5274	MMSRINSVGWMEEREDQNNSASWARNKPNNTIIATDTTTTSKPTAAAAFVENNTTRDDLASLCAFKPMLELDDEWYISSHHQHNNHHPQDMTFSPTFPDSDNLLLPAVDSSSSSSVFTNLDPSSSHLHYFLPPKPPTLSSLLNPFDIPFLDPQASSSFPLLPSTHFPSDTPPQTATATAFAGFHSLDDGSSKPLFHHRSKILRPLESLTPSGAPPTLFQKRAALRKNMSSGEGSEKKRKEREEVVEDVSFDGSGLNYDSDDLTEINNNGGKVDDGSAKKGGNSSNANSSVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTSAASSLTPSSNFHPLTPTPPTLPSRIKEELCPTSLPSPNAQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRAMDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYSGMM	492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g01884	492	MobiDBLite	consensus disorder prediction	278	294	-	-
	Phco7g01884	492	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	301	350	IPR011598	GO:0046983
	Phco7g01884	492	SMART	finulus	307	356	IPR011598	GO:0046983
	Phco7g01884	492	Pfam	Helix-loop-helix DNA-binding domain	308	350	IPR011598	GO:0046983
	Phco7g01884	492	MobiDBLite	consensus disorder prediction	12	35	-	-
	Phco7g01884	492	CDD	ACT_UUR-ACR-like	421	481	-	-
	Phco7g01884	492	MobiDBLite	consensus disorder prediction	226	314	-	-
	Phco7g01884	492	Coils	Coil	340	367	-	-
	Phco7g01884	492	CDD	bHLH_AtAMS_like	304	369	-	-
	Phco7g01884	492	MobiDBLite	consensus disorder prediction	365	406	-	-
	Phco7g01884	492	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	304	368	IPR036638	GO:0046983
	Phco7g01884	492	FunFam	BHLH transcription factor	297	365	-	-
	Phco7g01884	492	MobiDBLite	consensus disorder prediction	230	248	-	-
	Phco7g01884	492	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	144	488	-	-
	Phco7g01884	492	Gene3D	-	295	366	IPR036638	GO:0046983
	Phco7g01884	492	MobiDBLite	consensus disorder prediction	1	35	-	-
	Phco7g01884	492	MobiDBLite	consensus disorder prediction	298	314	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g01884	Phco-Chr7	22049943	22051978	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Phco7g01884		HLH	1.8e-09	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco8g00771	8	7711539	7712969	Phco7g01884	7	22049943	22051978	ECH
	Phco7g01884	7	22049943	22051978	Phco7g01884	7	22049943	22051978	ECH
	Phco4g03207	4	52785447	52788848	Phco7g01884	7	22049943	22051978	PCT