Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01788 ATGGAAGATGAAAGCCACACCAATTTCCGAAATGCCTTCATCACAGGAAGCCCAGAAAGCCCTTCCTTAAAGCCATCCAATAACACCACCACCACTAACCATCACAACAACAACAACAACAAAGAACAAGATCGCTTTCTCCCTATCGCCAACGTCGGAAGAATAATGAAAAAGGCCATCCCTGGCAATGGAAAAATCTCAAAGGATGCAAAAGAAACTGTTCAAGAGTGTGTCTCTGAGTTCATCAGCTTTGTCACAGGCGAAGCCTCTGACAAATGCCAAAGGGAAAAGAGAAAGACCATCAATGGAGATGACATCATTTGGGCCATCACAACCCTAGGATTTGAGGACTATGTGGACCCTCTAAAATCCTATCTCCAAAAATATAAAGAGATTGAAGGAGAGAAGCTTAACATTCCTAAGCAACAACGTTCTGAACAAAGGCTTCATCATCATCAACACCAAAATCCCCACCAAGACCAAAATAATAACAATCTAAGTAGTAGTGTATATTCCTCTCCAACTCTTATTTCTCAGCCATCTTACGTACCCACGGATCAACTATTTTCCCTACCATTCTCACCAAATTCCATTCAGAAACAGTTACAGCCGCAAGACCAGATCGATTCTGTGGGGCAATGGACTCTACAAGTACTGAAGGGTTTTCACTATTTGCTTTCTCTTCTTCGCAATAATGACCGCCACGCCTCCTTCCTTTTCCCCCTCTCACACCACCTGTGCCTCTGTGCTCTGCCAATTGCAGCTTCTTCGCTCACTTCAGATTTCAGTGTTTTTTAA 798 0.4311 MEDESHTNFRNAFITGSPESPSLKPSNNTTTTNHHNNNNNKEQDRFLPIANVGRIMKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYKEIEGEKLNIPKQQRSEQRLHHHQHQNPHQDQNNNNLSSSVYSSPTLISQPSYVPTDQLFSLPFSPNSIQKQLQPQDQIDSVGQWTLQVLKGFHYLLSLLRNNDRHASFLFPLSHHLCLCALPIAASSLTSDFSVF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01788 265 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco7g01788 265 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Phco7g01788 265 Gene3D Histone, subunit A 32 169 IPR009072 GO:0046982
Phco7g01788 265 MobiDBLite consensus disorder prediction 142 157 - -
Phco7g01788 265 MobiDBLite consensus disorder prediction 1 43 - -
Phco7g01788 265 SUPERFAMILY Histone-fold 43 156 IPR009072 GO:0046982
Phco7g01788 265 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Phco7g01788 265 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Phco7g01788 265 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Phco7g01788 265 ProSitePatterns NF-YB/HAP3 subunit signature. 77 93 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco7g01788 265 FunFam Nuclear transcription factor Y subunit B-3 35 161 - -
Phco7g01788 265 MobiDBLite consensus disorder prediction 142 170 - -
Phco7g01788 265 MobiDBLite consensus disorder prediction 8 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01788 Phco-Chr7 18436709 18439570 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco7g01788 CBFD_NFYB_HMF 9.5e-28 CL0012