Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01705 ATGGATACCAACCTAAACACTACATTCACCAACGTTAACACCACTTACAATCGCCAGACCATGCCCACAGATCAACATAACATCACCCTCCACGATCATCATCATCATCATCATCAGCATCACCAAATTCCAATGGGTGTTGGAATTTGGTCCAATCACCACCACCCTTTTCACACACACCCCTCTTCCTCTTCTTCAACTAATTTCCTAACCGAGGTGTTGGGAATCCAGTTTGAAGAAGACGAAGAGGAAGAGCTGGGAGCGATGAAGGAGATGATGTACCAGATGGCAGCGATGCAACCGGTGGACATAGACCCTGCCACCGTCAGAAAACCAAAGAGGCGAAACGTCCGCATAAGCGATGATCCGCAGAGTGTGGCTGCACGCCACAGAAGAGAGAAGATCAGTGAGAAAATCCGCATCCTCCAAAGACTTGTCCCCGGTGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAATCAACACCACAAATTGATTGCATTAATAATGCTACTGCTCCTAATTCTGATTGCCCTTTTGCACCAATTACATCGCACGCTTCCACCTCCATCAACAACCTGCCTCTTGGAATGGAATTCAACGCCAGAATTCATGCCCATGCCGCTGATTGA 681 0.4743 MDTNLNTTFTNVNTTYNRQTMPTDQHNITLHDHHHHHHQHHQIPMGVGIWSNHHHPFHTHPSSSSSTNFLTEVLGIQFEEDEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQIDCINNATAPNSDCPFAPITSHASTSINNLPLGMEFNARIHAHAAD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01705 226 SMART finulus 125 174 IPR011598 GO:0046983
Phco7g01705 226 CDD bHLH_AtIND_like 120 177 - -
Phco7g01705 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 178 IPR036638 GO:0046983
Phco7g01705 226 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 201 IPR045843 GO:0003700|GO:0006355
Phco7g01705 226 FunFam BHLH transcription factor 122 186 - -
Phco7g01705 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Phco7g01705 226 Gene3D - 122 184 IPR036638 GO:0046983
Phco7g01705 226 Pfam Helix-loop-helix DNA-binding domain 129 168 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01705 Phco-Chr7 17042863 17043543 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco7g01705 HLH 1.2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01705 7 17042863 17043543 Phco7g01705 7 17042863 17043543 ECH
Phco4g03081 4 51797876 51798721 Phco7g01705 7 17042863 17043543 PCT