Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01704 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGATAATAATAAGCAATTACGGTCTGGATGGTCCACTGCAGATGTTGCTGGTAGCAATAGTTCAAAGTGGTCGTATTTGGAAGGAAGTGATAAATTAAAGCCTGCTATGGGATTTTCATCCAAGGAACCCTTTTCCGGAGGCAGAGGTTCACATAAAGATGATGTTATGAATAAAGACTATGGAGGTTTGGATCCAACAATGGAATGGGATGAGGATGGAAGCTACAGCAAAAAAATTTCTCCTGGATCTGAGGAATGGAAACCTAAGAGACATAGTCAATCTCCTAAAAATGGTTGGAGCAGGTCAGTCAGGAGTCGAAGCAGGAGCCCTCATGGTTTTAGGTGGGATTCAGGAGTCAATGACAGAAATAGAATGCGGGCTGGAGGATCGACACAACCATGTAGAGACTTTGCTGTTGGTAAATGCAGAAGAGGCAGCCATTGCCACTTTCTTCATGATAGTCAAAATCATGAGGATAGTTGGGAAAATAAGAGCAGGGAAGATGGAGCTCCTAGATATTCTGTTCCCCATGAGGGTAGAGACTATTCTCTTAAGAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAGGGCAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATGACATTTCTGATGGACATGTTAAAGTTTCTGTGGATGAATTAACTAGAGAGAGGGAAATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGAGGCGGGCATGGACCAAACCGTAGTGGTGATACTCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGGCAGTCAATCCGGGGGGAGATCACCATAGGCTGGATAGACCGAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATAAAGTTTGGGACAGTCCAAAGTGGAATGATACAGTTGCTGTCTCTGATTCAGCAAAGCTGGTTGAGGAAAAAAGTGAAAATGTTGGTGCCGCAGAGCCAGGATTCACTCCTTTACCTACAAGGTACGGATGGAGTCATAGTTTGGATAAGAGCAGAGTGCATAGTGAGCAGCCTTTTTCAAGTGATAGGAAGGAAGTTGAAAGTTGGGTATCAGGAAACACTGCTACCAATGTTCATGTTTCCCAGTCAATAGGTACAGACATATGGTTGGGTGATACAAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCTTCCAACAGCATTGAAGAAAAGCATGAACAAAATAAGCGTGGGGTAAAACAAGGTGGTACGTATTTAGCCCCCTCTGAACGTGACAGAATACAAATTGCTGCAGGACAAGGCATTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCAGGCTTGCAAGCAGTTGGGCAAAGTCAGGCACCAGTTCCGATTCTACCTTCAAAGGGAGGAATCGTTGATGGTATGCCAAACCAGGAAGTCTCTACTGAGAAAAAGTACACTGCTGAGCCAAATATCATGGATCCAGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCCACTGAGAATCTGGTAGGCCAAGAACAGCTTGCTCAGCTGACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGACAACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCACTATGCCAAGGACACATCCTCCCTAGCAAAAGCTGAGATGTCTGCTATGCCTGTTTCCAATGCATTCATCCGCCCTGATTCTGCTGTGCCTGCTTCGAATACATTCATCCACCCAGATCCTGCTGTTGGACTCCCGAAGCCGTATGATCCAATGTGTGATAGTGTTGAGCAAAAGAGTGCTGTTGCAAGTGGGGTACCCTCATCCATTCCTCCAAGTAAAAGAGTTGCAGAAGATGTACTGGAAATTCCGTCACAGTTGTCCAACACATCAAGACAAAATCGTGGTGATTCTTCCAAGTCTGCTGGCTCAGAAGAACTAGTCAAGAGTGATACTCTAATCCAGTTGCAACCAGGTCAAAACACGGGAGTTGATAAGGATAATAACAAGGAAGTGTTACCCGAGGAAAGACACAAATCTCGAGTTGATCCTAAAAGTACCAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAACTGGAGGTCCTGATGATGCCAAGAAAACAAAGGATTTGAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGATGATTATAAAATAATCGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2589 0.4326 MSGSGKKRSSKWDLRVDPEFSPDNNKQLRSGWSTADVAGSNSSKWSYLEGSDKLKPAMGFSSKEPFSGGRGSHKDDVMNKDYGGLDPTMEWDEDGSYSKKISPGSEEWKPKRHSQSPKNGWSRSVRSRSRSPHGFRWDSGVNDRNRMRAGGSTQPCRDFAVGKCRRGSHCHFLHDSQNHEDSWENKSREDGAPRYSVPHEGRDYSLKSGRSNEACTNFAKGRCRMGASCKFVHHDISDGHVKVSVDELTREREIDRRHRDSSFEQGGGHGPNRSGDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWAVNPGGDHHRLDRPKLSDSDSPNRRPRDDRWGSDGNKADADKVWDSPKWNDTVAVSDSAKLVEEKSENVGAAEPGFTPLPTRYGWSHSLDKSRVHSEQPFSSDRKEVESWVSGNTATNVHVSQSIGTDIWLGDTKMSPDWHYRVGSSNSIEEKHEQNKRGVKQGGTYLAPSERDRIQIAAGQGINQNAESLNPLHSSGLQAVGQSQAPVPILPSKGGIVDGMPNQEVSTEKKYTAEPNIMDPGLSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHYAKDTSSLAKAEMSAMPVSNAFIRPDSAVPASNTFIHPDPAVGLPKPYDPMCDSVEQKSAVASGVPSSIPPSKRVAEDVLEIPSQLSNTSRQNRGDSSKSAGSEELVKSDTLIQLQPGQNTGVDKDNNKEVLPEERHKSRVDPKSTKENGPLENMEQTGGPDDAKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKDDYKIIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQAYVEKVQKA 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01704 862 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Phco7g01704 862 MobiDBLite consensus disorder prediction 690 734 - -
Phco7g01704 862 Pfam CCCH-type zinc finger 278 298 IPR041367 -
Phco7g01704 862 Gene3D - 146 250 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 23 48 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 311 359 - -
Phco7g01704 862 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 861 - -
Phco7g01704 862 ProSiteProfiles Zinc finger C3H1-type profile. 273 300 IPR000571 GO:0046872
Phco7g01704 862 MobiDBLite consensus disorder prediction 735 757 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 551 570 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 1 152 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 177 203 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 690 775 - -
Phco7g01704 862 Gene3D - 269 328 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 92 114 - -
Phco7g01704 862 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 175 IPR000571 GO:0046872
Phco7g01704 862 ProSiteProfiles Zinc finger C3H1-type profile. 209 237 IPR000571 GO:0046872
Phco7g01704 862 SUPERFAMILY CCCH zinc finger 275 298 IPR036855 GO:0046872
Phco7g01704 862 MobiDBLite consensus disorder prediction 8 22 - -
Phco7g01704 862 SMART c3hfinal6 273 299 IPR000571 GO:0046872
Phco7g01704 862 SMART c3hfinal6 150 176 IPR000571 GO:0046872
Phco7g01704 862 SMART c3hfinal6 210 235 IPR000571 GO:0046872
Phco7g01704 862 Pfam RNA-binding, Nab2-type zinc finger 214 233 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 462 481 - -
Phco7g01704 862 MobiDBLite consensus disorder prediction 555 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01704 Phco-Chr7 17026051 17030233 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco7g01704 zf-CCCH 5.5e-05 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01704 7 17026051 17030233 Phco7g01704 7 17026051 17030233 ECH