Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01699 ATGGGTCGTAGCTACACTCTCCCCCTAGAGCGAGTAGAATGGAGGAACAAGAAGAAGGAGCACAAAGAAACAAAACACACAAACAAATCTATTTGGTTCTCACAACCATTCTCCTCTCCCTCTCCAACTCAGGAAAACGGTTTCCTCGAAAATATAAATTCCAATTCTGCACTTTTGGTTGGCCAAGTTTCTCAATCCGCCATGGCTCCAGCCACCTCTTCGCCCACGGCTCAGAGGCACGTTGGCTTCAGCCACCGCACGCAGGCGCCGTTCCAGCTCAATGACTCCCCGAGCCAGCTCCATGACGACTCGCCGCGGGTGAGGAAGTACCGGCTGATGTCAGACATAATGGCGCGCGCCCAGTACGCGGTGGTGGAGAGAGAGACGTATAGTGATCTGTTGTGCGAGCAATGCGATTCCGGCGAGCTGTCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAGAGGCTTCCACATGAAATGCGTGAGGCCGATTGTTGTGAGGATTCCGATTGGATCGTGGCTTTGTCCTAAGTGTCAGGGAGGGAAGAGAGTGCGGACTTTTTCGCAGAAGAGGATAATTGATTTCTTCGGGATTGGTAGGAGTTATTTTTATGCGGATGACAAGTGTTCTTCTCAGGAGGCCAAGAAGCGTAGGAAACGTTCAAGACCTCTGGTACTACATAAGAAAAAAAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCCCAGAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATCAAATATAGAATTCTGTGATCACCTCACATACTCGCCTGGAATGGCTCCTAGATCTGCAAATCGGTCCGCACTGGAAAACGGTGACATGCAGATTCTTTCCAAGGAAGACTTGGAGACCGTAGAACACTGCATTGCTATGTCTAAACGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTTGTGTCAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACAGTTGTTGCTGAATACACTGGCGATGTGGATTACCTTCACAACCGGGAACGTGATGATTGTGACAGTATGATGACCCTTCTTCTTGGAAGAGAAAGTTCTCAAAGTCTAGTTATCTGTGCTGATAAACGTGGAAACGTCGCTCGTTTTATAAGCGGGATAAACAATCATACACAGGAAGGTAGGAAGAAGCAAAACTGCAAATGTGTGAGATACAGTGTTGATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTTTAAGGGAGAAAGGCTTTATTATGATTATAATGGTTATGAGTATCACTATCCGACTCATCATTTTGTCTGA 1344 0.4665 MGRSYTLPLERVEWRNKKKEHKETKHTNKSIWFSQPFSSPSPTQENGFLENINSNSALLVGQVSQSAMAPATSSPTAQRHVGFSHRTQAPFQLNDSPSQLHDDSPRVRKYRLMSDIMARAQYAVVERETYSDLLCEQCDSGELSEELLLCDKCDRGFHMKCVRPIVVRIPIGSWLCPKCQGGKRVRTFSQKRIIDFFGIGRSYFYADDKCSSQEAKKRRKRSRPLVLHKKKRRLLPFVPTKDPAQRLKQMGSLASALTASNIEFCDHLTYSPGMAPRSANRSALENGDMQILSKEDLETVEHCIAMSKRGEFPPFMVVYDLCQGYTVEADDLIKDMTVVAEYTGDVDYLHNRERDDCDSMMTLLLGRESSQSLVICADKRGNVARFISGINNHTQEGRKKQNCKCVRYSVDGECRVFLVATRDIFKGERLYYDYNGYEYHYPTHHFV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01699 447 ProSiteProfiles Zinc finger PHD-type profile. 132 182 IPR019787 -
Phco7g01699 447 FunFam Histone-lysine N-methyltransferase ATXR5 218 447 - -
Phco7g01699 447 SUPERFAMILY SET domain 307 436 IPR046341 -
Phco7g01699 447 SMART PHD_3 134 180 IPR001965 -
Phco7g01699 447 Pfam SET domain 353 435 IPR001214 GO:0005515
Phco7g01699 447 CDD PHD_RSF1 134 179 - -
Phco7g01699 447 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 209 445 - -
Phco7g01699 447 SUPERFAMILY FYVE/PHD zinc finger 125 185 IPR011011 -
Phco7g01699 447 Pfam PHD-finger 135 180 IPR019787 -
Phco7g01699 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 193 IPR013083 -
Phco7g01699 447 Gene3D SET domain 218 447 IPR046341 -
Phco7g01699 447 CDD SET_ATXR5_6-like 310 447 - -
Phco7g01699 447 ProSitePatterns Zinc finger PHD-type signature. 135 179 IPR019786 -
Phco7g01699 447 ProSiteProfiles SET domain profile. 313 435 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01699 Phco-Chr7 16908939 16912502 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco7g01699 SET 2.4e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01699 7 16908939 16912502 Phco7g01699 7 16908939 16912502 ECH