Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01680 ATGGATTTGGACGATTTCCGATCCATATTGGACACCTCGGGCGTTGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCGGACTGCGCCGCCGAATTGAAGCGCCGCCGCGACTCCATCGTGGAAAGCCTCTATTCCGCCACGGCCGCGCCTCCGCGGTGCCGCAATTGTGATGACGGCCAACTCCTCAGGCCCAACGGCCACCAAATCACGAAGCAGAACAGCCCTAGCCCTAGCCCCGTGCGACAACCTCACCGACGCCGTGCCGCCGAAGCCGCCAATTCCCCCGCCACGCCGCAGTCTCTGGAAAACGATGACGGCGGCGACGAGTTGGATCCTTACGGTGGTCTGTTCGACGACGAACAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCCTTGGTGGAGTTGCTTCAAAGCCTCGCGGACATGGATATTACATTCCAGGCGTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACGTTCGTCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGCTGAAACCACAGGGAGGAAGCGACACTCTGATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGTAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACACAAACCGAAAGTAATTCCCCGCAGTGAACCTCGGCTAAAACCCACGGCAGCACCGCAAATTTCTACCCCTGCTTCCGCTTCTCAAAACAGACAAAGAGACAGCAGTTTTGACGCGGAGAGGCTTGCTTCAGCCAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTTATGGATATCAACGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1062 0.5367 MDLDDFRSILDTSGVDVWMFIDAAIAVASADCAAELKRRRDSIVESLYSATAAPPRCRNCDDGQLLRPNGHQITKQNSPSPSPVRQPHRRRAAEAANSPATPQSLENDDGGDELDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLKPQGGSDTLMADGDSPVQKTTQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRLKPTAAPQISTPASASQNRQRDSSFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01680 353 MobiDBLite consensus disorder prediction 216 231 - -
Phco7g01680 353 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 209 IPR035441 -
Phco7g01680 353 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Phco7g01680 353 MobiDBLite consensus disorder prediction 206 353 - -
Phco7g01680 353 SMART TFS2_5 128 199 IPR003617 GO:0005634
Phco7g01680 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 IPR044790 -
Phco7g01680 353 CDD TFIIS_I 125 198 - -
Phco7g01680 353 MobiDBLite consensus disorder prediction 69 84 - -
Phco7g01680 353 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Phco7g01680 353 Coils Coil 295 322 - -
Phco7g01680 353 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 209 IPR035441 -
Phco7g01680 353 MobiDBLite consensus disorder prediction 290 318 - -
Phco7g01680 353 MobiDBLite consensus disorder prediction 275 289 - -
Phco7g01680 353 MobiDBLite consensus disorder prediction 59 119 - -
Phco7g01680 353 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01680 Phco-Chr7 16601839 16603704 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco7g01680 Med26 3.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01680 7 16601839 16603704 Phco7g01680 7 16601839 16603704 ECH
Phco7g01680 7 16601839 16603704 Phco4g03045 4 51475445 51477308 ECH
Phco4g03045 4 51475445 51477308 Phco7g01680 7 16601839 16603704 PCT