Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01658 ATGAAAGCCCTGTACAGAGGCTATCTCTTTCTTATATTCTTCGTCACCTTACTCTTTATTGGAAGAGCTTCTTCTTCTCTACTTCCCACCAGAGACCCTTCTCAGCAACTCCTCAACTTCAAAGCCTCTCTCCCAAACCCATCTCTGCTCCCCAACTGGCTCCCCAACCAGAACCCCTGTTCCTTCACCGGCATCACCTGCAACCAGACCCACCTCACTTCCATAGACCTCACTTCCATCCCTCTCAGTACCAACTTCTCCATTGTAGCCACCTACCTCCTCTCCCTTGACCACCTCCAGTCCATCTCCCTCAAATCCACCAACCTTACCGGTCCTTCCACCATTCCTCTCTCTCATTCCAAGTGCACCTCCTCCCTAACCACCATAGATCTGTCCCAGAACACCCTCTCCGGTTCCCTCAACGACATGTCCTTTCTTGCATCCTGTTCAAACCTTCAATCTCTCAACCTTTCTAGTAACCTTCTCGAATTCAACTCCTCGCACTGGAAACTCAACCTCCGCGTCGCAGACCTCTCCAACAACAAGATTTCCGGTCCCGGCATCCTGCTCTGGCTTCTCAACCCCGACATCGAACACCTGGCGCTCAAAGGTAACAAAATCACTGGAGATACCGACTTCTCCGCTTCCACTTCTCTGCAGCACTTGGACCTTTCCTCCAACAACTTCTCTGTAGCTATTCCTTCCTTGGGCGAGTGTTCCTCACTAAAATACTTGGACCTCTCTGCCAACAAATACTTTGGCGACATTGCACGCACTCTCTCCTCTTGCAAGACTCTCGTCTACCTCAACATCTCCAGTAACCAGTTCTCCGGTCAGGTTCCTTCCCTCCCTCTTGGTTCTCTCCAGTTCGTGTACCTTGCTGCCAACCACTTCCATGGCCCGATTCCTCCTGCACTCGCAGACCTCTGCTCCACTCTCCTCCAGCTGGATCTCTCTTCCAACAATCTCACCGGTGACCTCCCACGTGCCTTTGGTGCTTGCTCTTCCCTTCAATCCTTCGACATCTCGAGCAACCTCTTCTCCGGTGCGTTGCCCATGGAGGTTCTGACTCAAATGAGCAGTCTGAGGGAGCTTGCGGTGGCGTTCAACGAGTTCGGCGGTCCTCTCCCCGTGTCGCTGTCGAAGCTTTCCAGTTTGGAATTGCTGGATCTGAGTTCCAACAACTTCAGCGGGCCAATCCCTGGAACGCTGTGCGGAGATGCTGGGAATAACTTAAAGGAACTTTACCTGCAGAATAACCGGTTCATGGGTTTTATTCCTCCCACGCTCAGCAACTGTTCCAACCTTGTTGCCTTGGACTTGAGCTTCAACTTTCTGACGGGGACCATCCCTCCAAGTCTAGGGTCGCTCTCGAAGCTACGGGACCTGATTATCTGGTTGAATCAGCTCCATGGTGAGATACCTCAGGAGCTGATGTATCTGAAGAACTTAGAGAATCTTATCCTGGATTTCAATGAGTTGAGTGGGAACATTCCCTCTGGCATCGTTAACTGCACCAAGCTCAATTGGATCTCCCTCTCCAACAACAGACTGAGCGGAGAGATACCAGCCTGGATTGGGAAGCTTTCCAATCTGGCCATACTCAAACTCAGTAATAATTCCTTCTCCGGTCGTATTCCTCCGGAACTTGGGGATTGCACTAGTCTGATATGGTTGGATCTGAATACTAACTCACTAACTGGGCCCATTCCGCCTGAGCTGTCCAAGCAGTCCGGGAATATCGCCGTGAATTTCATCAATGGAAAGACTTATGTGTACATAAAGAACGATGGGAGTAAAGAGTGTCATGGAGCCGGGAACTTGCTGGAGTTTGCGGGGATCAGTCAGCAGCAGCTCAACCGGATTTCCACCAAGAACCCCTGCAATTTCACCAGGGTTTATGGAGGTAAGTTGCAGCCAACATTTAACCATAATGGTTCTATGATATTTTTGGATATCTCCCACAACATGTTGTCAGGCAGTATTCCGAAGGAATTTGGGTTCATGTACTATTTGACCATTCTCAATTTGGGACACAATAACGTGTCTGGGAGCATTCCTCAGGAGCTTGGGAAGATGAAGAATCTCAACATTCTTGATCTCTCTAATAATAGACTAGAAGGACAAATCCCGCAGAGTCTTACGGGACTCTCCTTGCTCACTGAGATTGACTTATCCAACAACATGCTTTCCGGGACTATTCCTGAGACTGGTCAATTTGATACTTTCCCTGCGGCGAGGTTTCAGAACAATTCTGGTCTCTGTGGTGTTCCCCTGTCTCCATGTGGGTCGGACCCTGCAAACAGTGCGAGTGCGCAGCATATGAAGTCTCACCGGGGTCAGGCTTCTCTGGCGGGGAGTGTGGCCATGGGATTGCTGTTCTCCCTCTTCTGCATCTTTGGTTTGATCATAATTGCCATTGAGACCAGAAAGAGGAGGAAGAAGAAAGAGGCTGCTCTTGAGGCCTACATGGATGGTAATTCGCATTCGGGTCCAGCCAATGTGAGCTGGAAGCACACCAGTACTCGGGAAGCGCTTAGCATAAACCTTGCAACTTTTGAGAAGCCCCTCCGAAAGCTTACTTTTGCGGACCTTCTTGATGCCACCAATGGCTTTCACAATGACAGTCTCATCGGCTCTGGCGGATTTGGTGATGTATACAAGGCTCAGTTGAAGGACGGAAGTGTTGTTGCCATCAAGAAGCTGATTCATGTCAGCGGACAAGGGGACAGAGAATTCACTGCTGAAATGGAGACCATTGGAAAAATCAAGCACAGGAACCTTGTTCCCTTGCTGGGATACTGCAAGGTTGGGGAGGAGAGGCTCTTGGTTTATGAGTATATGAAGTACGGCAGCTTAGAGGATGTTCTGCATGATCAGAAGAAAGCGGGGATAAAGCTGAACTGGTCGATTAGGAGGAAAATTGCCATTGGAGCTGCTAGAGGATTGGCTTTTCTTCACCACAATTGTATCCCTCACATCATTCATAGAGATATGAAGTCAAGCAATGTGTTGCTTGATGAAAACCTAGAAGCGAGGGTGTCTGATTTTGGAATGGCAAGGCTTATGAGTGCTATGGATACACATTTGAGTGTGAGCACACTGGCGGGCACCCCAGGGTATGTTCCTCCTGAGTACTACCAGAGCTTCAGATGCTCCACTAAAGGTGATGTCTACAGTTACGGTGTGGTTTTGCTGGAGCTGCTAACTGGGAAAAGGCCTACCGACTCAGCTGATTTTGGTGACAATAATCTTGTTGGATGGGTTAAACAACATGCCAAGCTGAAAATAAGTGATATTTTTGATCAGGAGCTCATGAAGGAAGATCCCAATCTGGAGATGGAACTTTTGCAGCACCTGAAGATTGCGTGTTCCTGTTTGGATGATCGGCCATGGAGGCGTCCCACCATGATTCAAGTAATGGCAATGTTCAAGCAGATTCAGGTGGGATCTGGGATTGATTCTCAGTCAACCATAGCCACCGAAGAGGAAGGTTTCAATGCCGTTGAAATGGTGGAGATGAGCATTAAAGAAGCTCCAGAATTGAGCAAACACTAG 3558 0.4896 MKALYRGYLFLIFFVTLLFIGRASSSLLPTRDPSQQLLNFKASLPNPSLLPNWLPNQNPCSFTGITCNQTHLTSIDLTSIPLSTNFSIVATYLLSLDHLQSISLKSTNLTGPSTIPLSHSKCTSSLTTIDLSQNTLSGSLNDMSFLASCSNLQSLNLSSNLLEFNSSHWKLNLRVADLSNNKISGPGILLWLLNPDIEHLALKGNKITGDTDFSASTSLQHLDLSSNNFSVAIPSLGECSSLKYLDLSANKYFGDIARTLSSCKTLVYLNISSNQFSGQVPSLPLGSLQFVYLAANHFHGPIPPALADLCSTLLQLDLSSNNLTGDLPRAFGACSSLQSFDISSNLFSGALPMEVLTQMSSLRELAVAFNEFGGPLPVSLSKLSSLELLDLSSNNFSGPIPGTLCGDAGNNLKELYLQNNRFMGFIPPTLSNCSNLVALDLSFNFLTGTIPPSLGSLSKLRDLIIWLNQLHGEIPQELMYLKNLENLILDFNELSGNIPSGIVNCTKLNWISLSNNRLSGEIPAWIGKLSNLAILKLSNNSFSGRIPPELGDCTSLIWLDLNTNSLTGPIPPELSKQSGNIAVNFINGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTKNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGSIPKEFGFMYYLTILNLGHNNVSGSIPQELGKMKNLNILDLSNNRLEGQIPQSLTGLSLLTEIDLSNNMLSGTIPETGQFDTFPAARFQNNSGLCGVPLSPCGSDPANSASAQHMKSHRGQASLAGSVAMGLLFSLFCIFGLIIIAIETRKRRKKKEAALEAYMDGNSHSGPANVSWKHTSTREALSINLATFEKPLRKLTFADLLDATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKAGIKLNWSIRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDIFDQELMKEDPNLEMELLQHLKIACSCLDDRPWRRPTMIQVMAMFKQIQVGSGIDSQSTIATEEEGFNAVEMVEMSIKEAPELSKH 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01658 1185 Pfam Brassinosteroid receptor island domain 579 643 IPR045381 -
Phco7g01658 1185 Gene3D Ribonuclease Inhibitor 37 762 IPR032675 -
Phco7g01658 1185 ProSiteProfiles Protein kinase domain profile. 872 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01658 1185 Pfam Protein kinase domain 872 1142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01658 1185 ProSiteProfiles Leucine-rich repeat profile. 218 240 IPR001611 GO:0005515
Phco7g01658 1185 SUPERFAMILY L domain-like 410 762 - -
Phco7g01658 1185 Gene3D Phosphorylase Kinase; domain 1 833 947 - -
Phco7g01658 1185 Pfam Leucine rich repeat 672 730 IPR001611 GO:0005515
Phco7g01658 1185 SMART LRR_typ_2 383 407 IPR003591 -
Phco7g01658 1185 SMART LRR_typ_2 217 239 IPR003591 -
Phco7g01658 1185 SMART LRR_typ_2 717 740 IPR003591 -
Phco7g01658 1185 SMART LRR_typ_2 411 433 IPR003591 -
Phco7g01658 1185 SMART LRR_typ_2 481 505 IPR003591 -
Phco7g01658 1185 SMART LRR_typ_2 693 716 IPR003591 -
Phco7g01658 1185 SMART LRR_typ_2 529 553 IPR003591 -
Phco7g01658 1185 SUPERFAMILY Protein kinase-like (PK-like) 858 1150 IPR011009 -
Phco7g01658 1185 FunFam Serine/threonine-protein kinase BRI1-like 1 586 643 - -
Phco7g01658 1185 PRINTS Leucine-rich repeat signature 313 326 - -
Phco7g01658 1185 PRINTS Leucine-rich repeat signature 693 706 - -
Phco7g01658 1185 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 406 591 - -
Phco7g01658 1185 Gene3D Transferase(Phosphotransferase) domain 1 948 1149 - -
Phco7g01658 1185 Pfam Leucine Rich repeats (2 copies) 217 256 IPR025875 -
Phco7g01658 1185 FunFam serine/threonine-protein kinase BRI1-like 2 833 947 - -
Phco7g01658 1185 FunFam Calmodulin-binding receptor kinase CaMRLK 286 402 - -
Phco7g01658 1185 CDD STKc_IRAK 878 1147 - -
Phco7g01658 1185 ProSitePatterns Protein kinases ATP-binding region signature. 878 901 IPR017441 GO:0005524
Phco7g01658 1185 FunFam Brassinosteroid LRR receptor kinase 948 1149 - -
Phco7g01658 1185 SUPERFAMILY L domain-like 53 235 - -
Phco7g01658 1185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 994 1006 IPR008271 GO:0004672|GO:0006468
Phco7g01658 1185 Gene3D - 584 644 - -
Phco7g01658 1185 SMART serkin_6 872 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01658 1185 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 410 1145 - -
Phco7g01658 1185 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Phco7g01658 1185 Pfam Leucine Rich Repeat 435 457 IPR001611 GO:0005515
Phco7g01658 1185 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515
Phco7g01658 1185 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 640 762 - -
Phco7g01658 1185 SUPERFAMILY L domain-like 172 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01658 Phco-Chr7 16102455 16106012 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Phco7g01658 Pkinase 5.7e-47 CL0016