Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g01598 | ATGGCTTTGGGAAGGGTACATCATCGGTTGTTGCTTGACACAAATTCAAGCACGCCTGCACCAAGTAACGTGAATAGGACAAGAGAGACTTTCACAGGTGATGCAAATTTTGACACCAACATGGTGATTATCTTGGCTGCGTTGCTCTGTGCGCTTATATGTGCTTTGGGACTCAACTCAATTGTGCGATGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAGACCCCAGAGGAGACTGCCGCACGTTTGGTAGTAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGTCGGTATTGCAGCCACAGATTGTCCGATTTGCCTTGGGGAGTTTGTGGATGGGGAGAAAGTAAGATTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCCAATTGCAGACAATCTCTGCTTGAGCAACCGACCATTTCTGGAGCTGTTGCTTCTGGAACCAGTAACTATGCAGGGAATGCTTTAGGAGGACATGAACATGTGTCTTTAGCAGTGACTGTGGAAGAGGTTCGTTAA | 594 | 0.4613 | MALGRVHHRLLLDTNSSTPAPSNVNRTRETFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVVKGLKKSALHQIPIVVYGSGSVGIAATDCPICLGEFVDGEKVRLLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEQPTISGAVASGTSNYAGNALGGHEHVSLAVTVEEVR | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g01598 | 197 | ProSiteProfiles | Zinc finger RING-type profile. | 114 | 156 | IPR001841 | - | |
| Phco7g01598 | 197 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 8 | 163 | IPR044602 | GO:0016567|GO:0016740 | |
| Phco7g01598 | 197 | Pfam | Ring finger domain | 113 | 156 | IPR001841 | - | |
| Phco7g01598 | 197 | CDD | RING-H2_EL5-like | 113 | 156 | - | - | |
| Phco7g01598 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 164 | IPR013083 | - | |
| Phco7g01598 | 197 | SMART | ring_2 | 114 | 155 | IPR001841 | - | |
| Phco7g01598 | 197 | SUPERFAMILY | RING/U-box | 113 | 162 | - | - | |
| Phco7g01598 | 197 | SMART | FANCL_C_2 | 110 | 163 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g01598 | Phco-Chr7 | 15325371 | 15325964 | Dispersed/Wgd |