Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01587 ATGCGAGCGTTATTTTCGAATATGAAAGGTTTTCTTTTTCTTGTGTGGTTGTTGGAGGTGGTTTGTGTGGCGGTGGCGGCGGTGAACCCCTCTCTGAACGATGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATACGAGATCCGAAGGGGAAGCTTGCGTCTTGGAGCGAGGACGATGAGAGTGCGTGTGGGGCTGGTTGGGTTGGGGTGAAGTGCAACCCTAGATCCAACAGAGTGGTGGAGATTAACCTTGATGGGTTTTCTCTCTCTGGGAGAATAGGTCGAGGGTTGCAAAGGTTGCAGTTTCTAAGGAAGCTTTCTCTGGCGAACAACAACCTCACTGGGGGGATAAACTCCAACATTGCTCGAATAGATAGTCTTAGGGTCATCGACTTGAGTGGCAATAGTCTCTCAGGGCAGGTGTCCGATGATGTTTTCCGACAATGTGGGTCTCTCAGGGCTGTTTCCTTGGCTAGGAACAGGTTTTCTGGGTCCATTCCTTCTGCTTTGGGGGCGTGTTCTGCTCTTGCTGCTATTGACCTTTCTAATAACCAGTTTTCTGGTTCTGTCCCCTCCGGGGTTTGGTCTTTGAGTGCTCTCAGGTCCTTGGATTTGTCTGATAACTTGTTGGAGGGAGAGATTCCTAAGGGGGTTGAGGCCATGAAGAATTTAAGGAGTGTTAGCTTGGCCAGGAATCGTTTAACTGGGAATGTTCCTGGTGGGTTTGGGAGCTGTTCGCTTTTGAGGTCCATTGATTTGGGGGATAATTCATTTTCTGGCAGTATTCCTGGTGATTTCAAGGAACTTGCATTGTGTGGTTACCTTAGTCTGCGAGGGAATGCTTTTTCTGGAGAGCTTCCTGAGTGGATTGGGGAGATGAGAGGTCTTGAGACGTTGGACCTTTCAAACAATGGGCTTACTGGTCGGGTTCCAAACTCTGTTGGAAATCTTCAGTCATTGAAGATGTTGAATTTTTCTGGGAATAGTTTCGGTGGTAGTCTTCCTGAGTCTATGGCCAATTGTACGAAACTTTTGGTGTTGGATGTCAGCCGAAATTCGATGTCCGGGGGGCTTCCATTGTGGATTTTCAAGTCAGATTTGGGCAAGGTTTTGTTGTCGGAAAATGGCGCAAGTGGTGGCCAGAAAAGCCCTTTGATTTCCTTGGCTGAAGTTGCAGTTCAAAGTCTTCAAGTTTTGGATTTGTCTCACAATGCATTTTCTGGTGAAATCACATCTGCTGTTGGAGGTTTAAGCAGCTTGCATGTTTTGAATTTAGCAAATAACTCTCTTAGAGGTCCTATACCAGCTGCAATTGGTGAGTTGAAAACATGTTCTAGTCTTGATTTGAGCTATAATAATCTAAATGGAAGCATACCTTGGCAAATAGGAGGAGCTGTGTCCTTGAAAGAACTGGTACTGAAAAAGAACTTCCTAATTGGGAAAATTCCAATGTCAATTGAGAACTGCACTTTGCTAACTACTCTGACCCTATCCCAGAACTGGCTGAGTGGCCCTATACCTGCAGCAGTTGCAAAACTTACCAACCTGCAAACTGTGGACTTATCTTACAACAACCTTACTGGAAACCTTCCAAAGCAACTGGCCGACCTTGCCAATCTTATTTCCTTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCGGCTGGTGGTTTTTTCAACACCATTTCGCCCACATCTGTTTCTGGCAATCCATCACTTTGTGGAGCTGCAGTAAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTCTAAATCCCAACACTTCTACTGACGCTAGCCCGGGTGCATTGCCTCAAAATTTGGGTCACAAAAGAATCATTCTCAGCATTTCGGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTTATTAGCATCACTGTTCTCAATCTCCGTGTTCGGTCCTCCACATCAAGAGATGCAGGTGCCCTCACATTTTCTGCAGGAGATGAATTCAGCCGTTCCCCCACTACAGATGCCAACTCTGGCAAGCTTGTGATGTTTTCTGGTGAGCCAGATTTCAGTTCTGGTGCGCATGCTTTGCTTAATAAGGACTGTGAGCTTGGGCGTGGAGGATTTGGTGCAGTGTACCAAACGGTTCTTAGAGATGGGCATTCAGTTGCAATAAAGAAGCTCACTGTATCAAGCCTTGTGAAGTCTCAAGAAGATTTTGAAAGAGAAGTAAAAAAGTTGGGAAAAATCAGACACCAAAACCTGGTGGAACTCGAGGGTTATTATTGGACTCCATCGCTGCAGCTTCTTATATACGAGTACGTCTCCGGTGGTAGTCTGTATAAGCATCTCCATGAAGGATCTGGTGGAAACTTCCTCTCATGGAACGAGAGATTTAATGTGATTCTGGGAACCGCCAAGGCCTTGGCACACTTGCACCAGTCCAACATTATTCACTATAACATAAAGTCAACCAATGTCCTTCTTGACAGTTATGGTGAAGCAAAGATAGGGGACTTTGGCCTAGCAAGGCTGTTACCAATGCTTGACCGATATGTGTTGAGCAGCAAAATTCAGAGTGCACTGGGATACATGGCACCGGAGTTTGCGTGCAAAACAGTGAAAATCACTGAGAAGTGTGATGTATATGGGTTTGGGATCCTGGTTTTGGAGATAGTAACAGGGAAGAGGCCAGTTGAATACATGGAGGATGATGTGGTGGTACTTTGTGACATGGTGAGAGGTGCTTTGGAAGAAGGTAGGGTGGAGGAATGCATTGATGAGAGGCTTGAAGGGAAATTCCCAGCAGAAGAAGCGATTCCAGTAATGAAGTTAGGCTTAATATGTACTTCTCAAGTGCCATCTAACAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTCATAAGATGTCCCTCTGAAGGACAAGAAGAATTGGGATGA 2937 0.458 MRALFSNMKGFLFLVWLLEVVCVAVAAVNPSLNDDVLGLIVFKADIRDPKGKLASWSEDDESACGAGWVGVKCNPRSNRVVEINLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINSNIARIDSLRVIDLSGNSLSGQVSDDVFRQCGSLRAVSLARNRFSGSIPSALGACSALAAIDLSNNQFSGSVPSGVWSLSALRSLDLSDNLLEGEIPKGVEAMKNLRSVSLARNRLTGNVPGGFGSCSLLRSIDLGDNSFSGSIPGDFKELALCGYLSLRGNAFSGELPEWIGEMRGLETLDLSNNGLTGRVPNSVGNLQSLKMLNFSGNSFGGSLPESMANCTKLLVLDVSRNSMSGGLPLWIFKSDLGKVLLSENGASGGQKSPLISLAEVAVQSLQVLDLSHNAFSGEITSAVGGLSSLHVLNLANNSLRGPIPAAIGELKTCSSLDLSYNNLNGSIPWQIGGAVSLKELVLKKNFLIGKIPMSIENCTLLTTLTLSQNWLSGPIPAAVAKLTNLQTVDLSYNNLTGNLPKQLADLANLISFNLSHNNLQGELPAGGFFNTISPTSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTSTDASPGALPQNLGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRSSTSRDAGALTFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTPSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHQSNIIHYNIKSTNVLLDSYGEAKIGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGILVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLEGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01587 978 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 689 771 - -
Phco7g01587 978 Pfam Protein tyrosine and serine/threonine kinase 697 963 IPR001245 GO:0004672|GO:0006468
Phco7g01587 978 Gene3D Ribonuclease Inhibitor 314 588 IPR032675 -
Phco7g01587 978 Gene3D Phosphorylase Kinase; domain 1 689 771 - -
Phco7g01587 978 Pfam Leucine Rich repeat 514 529 IPR001611 GO:0005515
Phco7g01587 978 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Phco7g01587 978 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Phco7g01587 978 Pfam Leucine rich repeat 152 211 IPR001611 GO:0005515
Phco7g01587 978 Pfam Leucine rich repeat 224 282 IPR001611 GO:0005515
Phco7g01587 978 SUPERFAMILY L domain-like 80 188 - -
Phco7g01587 978 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Phco7g01587 978 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 314 588 - -
Phco7g01587 978 SMART LRR_typ_2 294 317 IPR003591 -
Phco7g01587 978 SMART LRR_typ_2 222 245 IPR003591 -
Phco7g01587 978 SMART LRR_typ_2 538 562 IPR003591 -
Phco7g01587 978 SMART LRR_typ_2 418 442 IPR003591 -
Phco7g01587 978 SMART LRR_typ_2 198 221 IPR003591 -
Phco7g01587 978 SMART LRR_typ_2 125 149 IPR003591 -
Phco7g01587 978 SMART LRR_typ_2 318 342 IPR003591 -
Phco7g01587 978 SMART LRR_typ_2 514 537 IPR003591 -
Phco7g01587 978 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 772 973 - -
Phco7g01587 978 PRINTS Leucine-rich repeat signature 297 310 - -
Phco7g01587 978 PRINTS Leucine-rich repeat signature 514 527 - -
Phco7g01587 978 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 313 - -
Phco7g01587 978 ProSiteProfiles Protein kinase domain profile. 695 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01587 978 CDD STKc_IRAK 701 967 - -
Phco7g01587 978 Gene3D Transferase(Phosphotransferase) domain 1 772 976 - -
Phco7g01587 978 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 394 965 - -
Phco7g01587 978 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Phco7g01587 978 Gene3D Ribonuclease Inhibitor 33 313 IPR032675 -
Phco7g01587 978 SUPERFAMILY Protein kinase-like (PK-like) 699 962 IPR011009 -
Phco7g01587 978 SUPERFAMILY RNI-like 161 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01587 Phco-Chr7 15185337 15189055 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Phco7g01587 PK_Tyr_Ser-Thr 5.1e-43 CL0016