Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01580 ATGATGATCCCTCCGTTTATATTTGACACTCTCTCATTGTCTCGGATTTCTTCTCTTTCTTTCACTGGCGACACGGCCGCCACGAGACAAGAACAAGAGCAGCGTCAGGCACCGTTCTGGAGGAGAGAGGGGTCGGGTTTAATGGAGAAGGATCTGGTGGAATTGTATGACGCCGCGAAGAAGGCAGCTGATGCGGTCCTCTCCGGAGACGCCGAGCACGAGGAGAGCCGATGCATTGATGCCCTCGAACAGCTCAAGAAATTCCCTGTTAATTACAAGATTCTTGTTAACACTCAGGTGGGCAAACATCTTAAAGTTCTCACAAAGCACCCAAGGCAGACAATTCGGGCTTTTGCTGTTGACCTAATTGAGATATGGAAAGGAATAATTATCAAGGAAACAAGCAAAAATAAAAACGGGGGTATTGATAGTAAGGTTGAATCAGCTAACGGGGAGAGATCTAAATCTGGGAAAATGCAGAAGAGTCCTTCAGTGAAGATTGAAAAAGGTGAAACTGTCAAGGCTGAGCGACATGATAGGAATGGAACATCAAAGTCAAGCGCAGAAAGTATGAAAAAGGTACAAAACGATGTCAAGAATGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGTCAGCCAAGGAGGTAAAGCCAGTTTCTGGAGCAAAGAAAATATCGTCCAGTTCTGCAAATCCCCCAAAACTGACAACTATGGTCAAATCTAATGATTCAGCGCGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTGGCCAAGGTCTCTGTAGAGGCTGATGAAGATCTTGTAGCGATAGTCAATGATTCTGATCCTATTCGAGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAATGGGGTCCTTCCAATGGAGCGCAGAAGGTCAAGTACCGGTCCTTAATGTTTAACCTTAAGGATTCAAATAACCCTGATTTTCGGAGAAAAGTTCTGCTTGGTGTTGTTGAGCCTGAGCAACTGATCAACATGAGCTCAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAAAATCAGAAAATCACTGAGAAAGCTTTGTTTGAATGTGAGCGTGGAGGTCAACCAAAAGCTACAACCGATCAATTTAAGTGCGGGCGATGTGGTCAGAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACCTGTTGTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1248 0.4463 MMIPPFIFDTLSLSRISSLSFTGDTAATRQEQEQRQAPFWRREGSGLMEKDLVELYDAAKKAADAVLSGDAEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQTIRAFAVDLIEIWKGIIIKETSKNKNGGIDSKVESANGERSKSGKMQKSPSVKIEKGETVKAERHDRNGTSKSSAESMKKVQNDVKNEKTDRAASVKVEKSAKEVKPVSGAKKISSSSANPPKLTTMVKSNDSARDKIRELLHEALAKVSVEADEDLVAIVNDSDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSSAEMASEQRKQENQKITEKALFECERGGQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCCVCNNRWKFC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01580 415 SMART TFS2_5 55 132 IPR003617 GO:0005634
Phco7g01580 415 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 61 415 - -
Phco7g01580 415 ProSiteProfiles TFIIS N-terminal domain profile. 54 133 IPR017923 -
Phco7g01580 415 SUPERFAMILY Zinc beta-ribbon 354 413 - -
Phco7g01580 415 Pfam Transcription factor S-II (TFIIS) 375 413 IPR001222 GO:0003676|GO:0006351|GO:0008270
Phco7g01580 415 FunFam Probable Transcription elongation factor S-II 344 415 - -
Phco7g01580 415 CDD Zn-ribbon_TFIIS 368 414 - -
Phco7g01580 415 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 46 142 IPR035441 -
Phco7g01580 415 SMART Cys4_2 375 414 IPR001222 GO:0003676|GO:0006351|GO:0008270
Phco7g01580 415 ProSitePatterns Zinc finger TFIIS-type signature. 377 412 IPR001222 GO:0003676|GO:0006351|GO:0008270
Phco7g01580 415 ProSiteProfiles Zinc finger TFIIS-type profile. 373 413 IPR001222 GO:0003676|GO:0006351|GO:0008270
Phco7g01580 415 MobiDBLite consensus disorder prediction 137 243 - -
Phco7g01580 415 CDD TFIIS_I 70 130 - -
Phco7g01580 415 Gene3D - 344 415 - -
Phco7g01580 415 ProSiteProfiles TFIIS central domain profile. 247 370 IPR003618 GO:0006351
Phco7g01580 415 PIRSF TFIIS 49 415 IPR035100 -
Phco7g01580 415 MobiDBLite consensus disorder prediction 162 220 - -
Phco7g01580 415 SUPERFAMILY Elongation factor TFIIS domain 2 235 345 IPR036575 GO:0006351
Phco7g01580 415 MobiDBLite consensus disorder prediction 224 242 - -
Phco7g01580 415 Pfam TFIIS helical bundle-like domain 81 130 IPR017923 -
Phco7g01580 415 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 71 140 IPR035441 -
Phco7g01580 415 Gene3D - 223 343 IPR036575 GO:0006351
Phco7g01580 415 Pfam Transcription factor S-II (TFIIS), central domain 244 361 IPR003618 GO:0006351
Phco7g01580 415 NCBIfam transcription elongation factor S-II 59 415 IPR006289 GO:0003676|GO:0005634|GO:0006368
Phco7g01580 415 SMART mid_6 245 353 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01580 Phco-Chr7 15049782 15053569 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco7g01580 TFIIS_M 6.2e-32 No_clan