Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01572 ATGAAGTTGCAGTTCTGTATTGTTGGACTTATTCTATTAGGCTCCACACTGTCCCTATGTGGCCTGATAGTAGCTGACTTGAAGTCTGACCAACAAGCTCTGTTGGAGTTTGCTTCAAGTGTCCCACATGCCCCAAGGCTCAACTGGAAGAATGACTCTGCTTCAATTTGCACCTCGTGGGTTGGTGTGACATGCAACTCAAATGGCACACGTGTCATAGGCCTTCATCTTCCAGGAATGGGATTCACTGGGACCATTCAAGAGAACAGCATAGGAAAACTAGATGCTCTTAGGGTCCTGAGTCTTCATTCCAATGGCCTTAGAGGAAATCTTCCTTCTAATATTCTCTCCATTCCTTCACTCCAATTTGTATACCTTCAGCGCAATAGCTTCTCCGGCGCAATTCCTTCTCCGGTGTCCCCTAAACTCTTTGCATTGGATATTTCCTTTAACTCCTTTTCTGGCAGCATCCCACCTGCATTTCAGAATCTGAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCCATATCTGGGGCTATTCCTGACTTCAACCTTCCAAGGCTCAAACATTTGAACTTGAGTTACAATAACTTGAATGGCTCAATTCCAAATTCCATAAAGACATTCCCTTATTCCTCTTTTGTCGGGAACTCTCTCTTATGTGGGCCACCTCTAAATGATTGCTCTACAATCTCCCCTTCTCCATCTGCTTCCACTGATGATTACCAGCCACTCACTCCACCAACCACCCTAAACCAAAAGGGTACCAACCATAAGAAAAGCTTTGGTCTGGCTACTGTCCTTGCTCTAGTCATTGGGGTCTTAGCCGTCCTCTCTCTACTAGTTGTAGCGATCTGTGTGTTCTGTTTGAAGAGGAAGAAAAACAGTAAAAGCAGTGGTGGCATACTGAAAGGAAAGGCTTCATGCGCTGGAAAGACAGAGGTTTCAAAGAGTTTCGGGAGTGGGGTGCAAGGGGCTGAGAAAAACAAACTATTTTTCTTTGAAGGTTCCTCTTCTAGCTTTGACCTTGAAGATTTGCTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGTTATGGAACAGCATACAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTCAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAAGGAGTTTGAGCAGCATTTGGAGATTGTGGGGAGATTTGGAAGCCACCCAAATGTGATGCCCCTAAGAGCTTATTACTATTCCAAAGATGAAAAACTTCTGGTTTACAACTACATGCCTGGTGGAAGCTTGTTTTTCTTGTTGCACGGAAACAAGGGTGCAGGAAGAACCCCACTAGACTGGGATTCCAGAGTGAAGATTGTGCATGGAGCTGCGAAGGGAATTGCTTTCATCCACTCCGAGGGAGGTCCAAAATTCACACATGGCAACATCAAGTCAAACAATGTGCTCATAAGCCAAGAACTAGACGGCTGCATCTCTGATGTTGGATTGCCACCTCTAATGAACACCCCAGCAACCATGTCTAGAAGCAATGGCTATAGAGCTCCAGAAGTCACCGACTCAAAAAAGATCACTCAGAAGTCTGATGTATACAGCTTTGGTGTGGTGCTGCTTGAAATGCTGACAGGGAAGACCCCACTGAGGTATCCAGGGTTTGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTTAGGGAGGAATGGACTGCAGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAATATGTCGAAGAGGAAATGGTGCAGATGCTTCAGATTGCATTAGCATGTGTAGCTAAGGGGTCAGAAAATAGGCCTAGAATGGATGAAGTTGCTAAAATGATTGAGGAAATTAAGCATCCTGAGTTGAAGAACCGGCCATCCTCTGAGTCTGAGTCAAATGTGCACACACCATGA 1923 0.4514 MKLQFCIVGLILLGSTLSLCGLIVADLKSDQQALLEFASSVPHAPRLNWKNDSASICTSWVGVTCNSNGTRVIGLHLPGMGFTGTIQENSIGKLDALRVLSLHSNGLRGNLPSNILSIPSLQFVYLQRNSFSGAIPSPVSPKLFALDISFNSFSGSIPPAFQNLRRLTWLYLQNNSISGAIPDFNLPRLKHLNLSYNNLNGSIPNSIKTFPYSSFVGNSLLCGPPLNDCSTISPSPSASTDDYQPLTPPTTLNQKGTNHKKSFGLATVLALVIGVLAVLSLLVVAICVFCLKRKKNSKSSGGILKGKASCAGKTEVSKSFGSGVQGAEKNKLFFFEGSSSSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQHLEIVGRFGSHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNKGAGRTPLDWDSRVKIVHGAAKGIAFIHSEGGPKFTHGNIKSNNVLISQELDGCISDVGLPPLMNTPATMSRSNGYRAPEVTDSKKITQKSDVYSFGVVLLEMLTGKTPLRYPGFEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGSENRPRMDEVAKMIEEIKHPELKNRPSSESESNVHTP 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01572 640 MobiDBLite consensus disorder prediction 234 255 - -
Phco7g01572 640 ProSitePatterns Protein kinases ATP-binding region signature. 355 386 IPR017441 GO:0005524
Phco7g01572 640 SUPERFAMILY Protein kinase-like (PK-like) 353 620 IPR011009 -
Phco7g01572 640 FunFam pollen receptor-like kinase 1 317 424 - -
Phco7g01572 640 Gene3D Phosphorylase Kinase; domain 1 315 424 - -
Phco7g01572 640 Gene3D Transferase(Phosphotransferase) domain 1 425 638 - -
Phco7g01572 640 Pfam Leucine Rich Repeat 144 164 IPR001611 GO:0005515
Phco7g01572 640 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 425 631 - -
Phco7g01572 640 Pfam Protein kinase domain 353 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01572 640 MobiDBLite consensus disorder prediction 619 640 - -
Phco7g01572 640 Gene3D Ribonuclease Inhibitor 141 231 IPR032675 -
Phco7g01572 640 FunFam Leucine-rich repeat receptor-like protein kinase 140 229 - -
Phco7g01572 640 PANTHER OS05G0588300 PROTEIN 17 632 - -
Phco7g01572 640 Pfam Leucine Rich repeats (2 copies) 166 204 IPR025875 -
Phco7g01572 640 SUPERFAMILY L domain-like 39 227 - -
Phco7g01572 640 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Phco7g01572 640 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Phco7g01572 640 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01572 Phco-Chr7 14982598 14985150 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco7g01572 Pkinase 1.5e-34 CL0016