Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01555 ATGGAGACTCTGAAAGCAGCTATTCCAGAAAGCCTGAAGCGAGCGATAGCGGATAGCAATGTCGATGATCTTCAAAGCACGTGTTCTTCTCTTCACCGCTTCTTTCTCCACTTCGATCCATTTCACCAGATTATCACTCAACTGGCGGATCCAAAGTATGGTCTGTGCGGTAAGAGTGAGGAAGATGCCTTGAAATCCAAGCAGCTTGGGAATGAATGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGACTGCTATACCCAGGCATTGCGCAAGGCTCCATTAGATACTCGTGATATGAAAAGTAATCTTGTTGCAACATTATATATCAATCGGGCTACTGTATTGCATAAAATGAGTCTTTTAGTAGAATGCTTGCGAGATTGCACTCGAGCTCTTCAAATTTGTCCAAGCCATGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGGCAATTACAGAAATGCAATTTGTGACCTAAATGTGGCCAAGATTGTGGAACCTTCAATGGGTGGGAAGAGACAAATAGAAGTTGAACTGAAAATTCTTTTAGACCAATGCAAAAGCACAAGTGTGGTAGTACAGATGCAACATAAGGATAACAGCTGCAATACTGTGGGTGAGATGCCTCAAATGAAGCTACAGTGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTCTCATCATGTATCATTTCACCAGGTTCTTTGGTTCATTCCGAAGAACCTTATGCTATGATAATTTTAAAGCAATGTCGGGAAACCCATTGCCATTATTGTTTGAATGATCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGATACGAGCAGGTGGGCAAATGTTTAGGATTTGCCCAGAAAAGAATGACACTTTTAAAGAAATGCCCAGTGATCTTGGAGAATATGCTTCTGAAGTTATCCAAAGCGATGATTCTGAACAAGAAATTGAGGATATTACTGAACATAAACATGAATGTGGAGGTGTACATTGGCCAGTGGTACTGCCATCCGAGATAGTTTTGGCTGGCCGAATACTAGCAGGGTTTTTGCTGAATAGCACATCTGAAAATATTGTAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACACATGTCATCCGAAAGCAAATTGGATTCACATATATATGCCACTGTATTGTTATATTGTCTTCAGCACTCTTGTGGAACTATGTTTTCCATAGATGGAGTCTCCATATCACAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACCATTGTTCGTTTAAAATCAATAGATGCTCATGGACTATCAGGTCATTTTGGAGAATTTCCATTTCAATCCGGTGCACATTCAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATCTATAAAGCTGCCAGTTTATTTAACCATTCTTGCCAACCGAATGTTCATGCATATTTTCTTTCACGCACTCTTTACCTACGAACCACACATGGTGTAGCAGCTGGTTGTGAGCTAGAACTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCGTTAATTTTCTCAAAGACGAATATTCGTTTCATTGTCAGTGTATTGGTTGTTCAGAAGTTAATGTGTCTGACGTAGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTAGAAAGCAGAGTACTTGACTGTGAACATCGGAAAGCCAAGCACTTAACTATTACTGACTGTGTTGACAAGAATGATGACATTTGTGTATCTCTTAATGTCTTCAAACAAAACGGGGCCTATATTCATGTTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCACATGCTGCAGTCAGTGAAGCTTTAATATGTATAAAAAGGTTGCAGGATGCAATATTGTCGAAAGAAATTTCAAGTATTACTATTTCTGATGCTTTGATATCTCTTCAATCGCTAAGATTAAATTTGCATGCTTACAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCTCAGGCTTTTTGTTTAGTGGGAGAATTACAATTATCTGTTGATCATTGCAAAGCTTCTATCCAGATTCTGGAAAAGCTATATGATACTGATGATATTGTTATTGCTTATGAACTGGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATTCTACTGCTGCGGAAAGCATAAATCGAATTGATGACATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTGTTCCCTGATCTTCAATATCTCAGGAGAGAAATTGAGAAATTTTCAGTGAAGGCCATCCAATAA 2361 0.3973 METLKAAIPESLKRAIADSNVDDLQSTCSSLHRFFLHFDPFHQIITQLADPKYGLCGKSEEDALKSKQLGNECFSNADYAKALDCYTQALRKAPLDTRDMKSNLVATLYINRATVLHKMSLLVECLRDCTRALQICPSHAKAWYRRGKANASLGNYRNAICDLNVAKIVEPSMGGKRQIEVELKILLDQCKSTSVVVQMQHKDNSCNTVGEMPQMKLQCVSMPDKGRGMVSSCIISPGSLVHSEEPYAMIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIRAGGQMFRICPEKNDTFKEMPSDLGEYASEVIQSDDSEQEIEDITEHKHECGGVHWPVVLPSEIVLAGRILAGFLLNSTSENIVNFVERLELSHCYKHMSSESKLDSHIYATVLLYCLQHSCGTMFSIDGVSISQVVIIISQIKVNCMTIVRLKSIDAHGLSGHFGEFPFQSGAHSTSNVEQVRVGKAIYKAASLFNHSCQPNVHAYFLSRTLYLRTTHGVAAGCELELSYGPQVGLWDCKDRVNFLKDEYSFHCQCIGCSEVNVSDVVLNAFHCVNPNCSGAVLESRVLDCEHRKAKHLTITDCVDKNDDICVSLNVFKQNGAYIHVQPGYCLKCGSYCDLESSHAAVSEALICIKRLQDAILSKEISSITISDALISLQSLRLNLHAYNKLIAEAEDSIAQAFCLVGELQLSVDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDSTAAESINRIDDIFSRYYGLHADLVFPDLQYLRREIEKFSVKAIQ 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01555 786 SMART tpr_5 684 717 IPR019734 GO:0005515
Phco7g01555 786 SMART tpr_5 106 139 IPR019734 GO:0005515
Phco7g01555 786 SMART tpr_5 140 173 IPR019734 GO:0005515
Phco7g01555 786 SMART tpr_5 63 96 IPR019734 GO:0005515
Phco7g01555 786 Gene3D Tetratricopeptide repeat domain 526 781 IPR011990 GO:0005515
Phco7g01555 786 Gene3D - 259 299 - -
Phco7g01555 786 ProSiteProfiles SET domain profile. 215 521 IPR001214 GO:0005515
Phco7g01555 786 SUPERFAMILY TPR-like 60 172 IPR011990 GO:0005515
Phco7g01555 786 Gene3D SET domain 425 520 IPR046341 -
Phco7g01555 786 Gene3D Tetratricopeptide repeat domain 42 193 IPR011990 GO:0005515
Phco7g01555 786 SUPERFAMILY SET domain 219 546 IPR046341 -
Phco7g01555 786 Coils Coil 669 689 - -
Phco7g01555 786 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 780 - -
Phco7g01555 786 Pfam SET domain 226 521 IPR001214 GO:0005515
Phco7g01555 786 Gene3D SET domain 228 258 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco7g01555 SET 3e-07 No_clan