Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01533 ATGAGTTCCGTCGACTGTTATCCGTCGCGCGGGGACGATGTCTCCGTCGTGTCGCTGGATTCTCTACCGTTAGGGTTCCGATTCAGACCTACCGACGAGGAACTCATCGATTACTACCTGCGACAGAAGATTAACGGCAATGGTGCCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCCTGGGACATGCCTGATTTGTCGGTGATACGGAACAAGGATCCGGAATGGTTCTTCTTCTGTCCACAGGACAGAAAGTATCCAAACGGGCATCGATTGAACAGGGCAACGACTCATGGGTATTGGAAGGCAACAGGGAAGGATCGTAGAATTAAGTCTGGGATGATGTTGATTGGAATGAAGAAGACTTTGGTGTTCTACACTGGTCGTGCGCCCAAAGGGAAGAGGACTAATTGGGTTATGCACGAATATCGCCCCACCTTGAAGGAGCTTGATGGCACCAATCCTGGACAGAATGCATATGTCCTTTGTCGCTTGTTTAAGAAACACGACGAGAGCCTTGAAGTTTCGCACTGTGATGAGGCAGAACAGACTGCTTCAACTCCGATTGCTGCCAATTACTCTACGGAGGAAATACAGTCTGGTCTGGCTGTTGTTGCAGTGTCCCCATCACTTGTTACAGAGGATGATAAGCACCAGGCAATTATCCCTACGCACTCTGAGGAAGCAATATCCAACGTTATAACTCCAGTTGATTGCCATAGTGATGGATATGATGTTTCTGATGGACAAAATAAATATGTGGCACCAACTGCAGAGGAGTTTCAGCCGTGGAACGTTGATATGTGTTACGATCCAAAAAATGAGCTATTGTATGACAAATTATTTTCCCCTGTACTTGCACATATTCAACCAGAATTTCATTATCAACCAAACAGTGAATCAGATAGTCGGTATGGGCTTCAATATGGCACCAATGAGACAAACATTTCAGACTTTTTGAATTCTGTTGTTAACTGGGACGCACTACCATACGAGGAGCCCAATTGTCAACAGTGGAGCTCCCCCTCGTTTAATGTTCAGAATAGTGTATTAGGCAGCCACATAGATTCTGAACTTGCCAATATGACATATATGCAAGCTGGTTACGCTGAGGAGGCAAACGACAGAAAGATTCCTTTGGTGATAGCTCCAGAATTTTGCAGCACCACTGGCATCCCCATTGACCGTGGCGGTGATGAGCAGAAGAGCAATGTCGAGTTATTTCAAAACAATTCCCAGAGAGCTTTTACTGATTATCAGCAATGTAGTATCTTTAATGCAGTTCCTTGTGGGGATACTGGAATCATTAGGAAGACACGAGTGGTTCAAAATGAAAAGCTAAGTGCAAACGTAACACAAGGCACGGCGCAGAGGAGAATTCGTTTGGTGCAGAAGGCCCGAAATGAACTCTCAAATAAGATGGTGAAAAATGAGCTTGATTCAAAATCAATCATTGCAGTGGAGGAGAAAGCTTCAGAAAACCATGCTTCGGATGAATGTGCTACTCTTACTGATGATGGGAATGAACTGCAGAAGACACCTGAGTCAAATGGCAATAGAAAGATTTGTCGACAAGTTGGCAAAGCAAGTTCCACCTTGGGGTTAAAAGATTTTTTATTGCTCAGAAGGGTGCCATACATTTCAAAGGCTACCTCCAATCGTGCCAAGTGCTCTTCTATTTTTGTAGTTTCTGCCTTTCTAATGGTCTCATTAGTGGTCTTTACTGACATCTGCGGATATCTTAAATTCTAA 1764 0.4444 MSSVDCYPSRGDDVSVVSLDSLPLGFRFRPTDEELIDYYLRQKINGNGAEVWVIREIDVCKWEPWDMPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRRIKSGMMLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKHDESLEVSHCDEAEQTASTPIAANYSTEEIQSGLAVVAVSPSLVTEDDKHQAIIPTHSEEAISNVITPVDCHSDGYDVSDGQNKYVAPTAEEFQPWNVDMCYDPKNELLYDKLFSPVLAHIQPEFHYQPNSESDSRYGLQYGTNETNISDFLNSVVNWDALPYEEPNCQQWSSPSFNVQNSVLGSHIDSELANMTYMQAGYAEEANDRKIPLVIAPEFCSTTGIPIDRGGDEQKSNVELFQNNSQRAFTDYQQCSIFNAVPCGDTGIIRKTRVVQNEKLSANVTQGTAQRRIRLVQKARNELSNKMVKNELDSKSIIAVEEKASENHASDECATLTDDGNELQKTPESNGNRKICRQVGKASSTLGLKDFLLLRRVPYISKATSNRAKCSSIFVVSAFLMVSLVVFTDICGYLKF 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01533 587 FunFam Nac domain-containing protein 86 31 175 - -
Phco7g01533 587 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Phco7g01533 587 SUPERFAMILY NAC domain 19 172 IPR036093 GO:0003677|GO:0006355
Phco7g01533 587 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Phco7g01533 587 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Phco7g01533 587 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01533 Phco-Chr7 14542818 14545909 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco7g01533 NAM 2.9e-35 No_clan