Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01514 ATGGGGGAGGTGGTGATGAGTGGAGAGAAGTCAGTGAGGGTGGAGAAGGAAGAGAGTGCGAGTGCTAGCAAGGGTGAATTGAAGGGCTTGATGAGGTGGGAGAAGTTTCTGCCTAGGATGATTTTGAGGGTGTTATTAGTTGAAGCCGATGACTCCACAAGGCAGATTATAGCTGCGCTTCTCAGAAAATGCAGCTATAAAGTGGCTGCTGTTTCTGATGGGTTGAAGGCGTGGGAATTACTCAAGGGAAGGCCGGGCAATGTTGATCTTATACTGACGGAAGTGGATTTGCCATCCATATCTGGCTATGCACTTCTTACGTTGATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGCTGAGAGGTGCTGCCGATTATCTTGTTAAGCCAATAAGGAAAAATGAACTGAGAAATTTGTGGCAGCATGTTTGGAGAAGACATTCATCAGCCACTGGCACAAATGGTCCCCAAGATGAGAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAATAATGCTGCTAGCAATCGTTCAAGTGGTGATGCCGCCTGCAATCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACTAAGCCTGACTTGGAAGCTGAAAGTGGCCCTGTGGATAACAGGCTCGAATTTTCTCCGCTGAAATGTGGGGAGGAATATCCAAATGGAGCAGAGACACAAGAGGTTGAAACATGCATTCGTTTAGGACGGACATTGATGATGAATGACAGTCATGCTGGAGGATTAATTATGCACAGAAATGGTGAGGCAAGCACAACTAATGACAAGGATGCTGATCCAGAGCATTTGGGGAATGCTAGCATCAGTGGTGAGGCTCATGACAGTCACTATGTTCAAATTAACTCTTCCAGGGAAGCTATTGACTTGATAGGAGCATTTCATACTCATCCCAACTGCATGGTAAAGAGTCCCACAGTTGATTGCACAGGCAAGGTTGACCTTTCTCCTCAATTAGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGATAGGCACACCTTGATGCATTCTAATGCTTCAGCCTTCAAGCGGTATACAAACAGGCAATTGCAAGTATTGACGCCTGCAGCGCTAATTAACTTGTCTGATCAACAAAGAGATCAGAGAGCAAATGGTGAGAAAAGCATCTCACACGTTGTTACTGGCTGCAACTCCGATAGTTCAACACCAGGTATGCAAAGATATATCGTGTCTCCAACTGCTGTCCAATCAAAAGAGTCTGAACTTGCAACCTCACACTCTCAGCAAGTGCATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGGACAGCCTATGGTTCTGTACTTCCTTCAATGTTTCGTACACAGTCAGGTCCACCAACAATGCCAAGTCCAAGTTCAGTTGTGCTTCTTGAACCAAACTTTCAAAATGCTTTTTATCAGTCAAACATGAAGGAGAGTTGTTCGGAGCAGCTTTATGAACCTCTTGGTCCAAATGGAAACAGTTCCCAGAACCACATTGTGTACACACAGGAGCACAAAACAGAACATGCAGAGGATCGAGGGCATATCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGTAATGGAAATGCAAACCATCTTAACAGCATCGGTTATGGAAGCAACTGTGGAAGTATCAGCAATGTTGATCAAGTTACCACTGTCAGAGTAGCTTCAGAGAGCAAGAATGAGGACCTCACAAACAATTCAAACTCTCATCGATCCATCCAAAGAGAAGCAGCATTAAACAAATTCCGCTTGAAAAGAAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAGTTTGTTCGTCAAGTTCATCCTGATGGTCTTGTTGCAGAACAAGATGGTAAAGAATATGGTCATTCACAGATTTCTGACTCGCTGGAGAGGAGGGCATGA 2073 0.4399 MGEVVMSGEKSVRVEKEESASASKGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVSDGLKAWELLKGRPGNVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRHSSATGTNGPQDESVAQQKVEATAENNAASNRSSGDAACNQRNMELIEKGSDAQSSCTKPDLEAESGPVDNRLEFSPLKCGEEYPNGAETQEVETCIRLGRTLMMNDSHAGGLIMHRNGEASTTNDKDADPEHLGNASISGEAHDSHYVQINSSREAIDLIGAFHTHPNCMVKSPTVDCTGKVDLSPQLDLSLRRSRPSSFENELTEDRHTLMHSNASAFKRYTNRQLQVLTPAALINLSDQQRDQRANGEKSISHVVTGCNSDSSTPGMQRYIVSPTAVQSKESELATSHSQQVHSLPIPVKGVRFNDLWTAYGSVLPSMFRTQSGPPTMPSPSSVVLLEPNFQNAFYQSNMKESCSEQLYEPLGPNGNSSQNHIVYTQEHKTEHAEDRGHISPTTDQSVSSSFCNGNANHLNSIGYGSNCGSISNVDQVTTVRVASESKNEDLTNNSNSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDGLVAEQDGKEYGHSQISDSLERRA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01514 690 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Phco7g01514 690 MobiDBLite consensus disorder prediction 411 432 - -
Phco7g01514 690 SUPERFAMILY CheY-like 42 167 IPR011006 -
Phco7g01514 690 MobiDBLite consensus disorder prediction 644 690 - -
Phco7g01514 690 SMART REC_2 42 157 IPR001789 GO:0000160
Phco7g01514 690 MobiDBLite consensus disorder prediction 668 690 - -
Phco7g01514 690 MobiDBLite consensus disorder prediction 644 659 - -
Phco7g01514 690 Pfam CCT motif 620 662 IPR010402 GO:0005515
Phco7g01514 690 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Phco7g01514 690 CDD psREC_PRR 44 147 - -
Phco7g01514 690 Gene3D - 40 230 - -
Phco7g01514 690 MobiDBLite consensus disorder prediction 165 200 - -
Phco7g01514 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 43 207 IPR045279 GO:0009736
Phco7g01514 690 MobiDBLite consensus disorder prediction 213 233 - -
Phco7g01514 690 MobiDBLite consensus disorder prediction 415 432 - -
Phco7g01514 690 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01514 Phco-Chr7 14306727 14311074 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Phco7g01514 Response_reg 2.4e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01514 7 14306727 14311074 Phco7g01514 7 14306727 14311074 ECH