Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01488 ATGATCAACATTCCACTTCTCTTGCTCTCTTGTTTCCTATTTCATCATTTTCATGCCATCTCATGCAACACTAACACAGACACAGATGTCCTTCTTTCTTTCAAATCTCAAGTCACTGACCCAAAAAATGCTCTCTCTGGCTGGTCTGCACACTCCAACCACTGCAACTGGTATGGTGTCACATGCACCAAAGTTGGAAATAGGGTCCAATCTCTCAATCTACCAGGACTTTCTCTCTCAGCCAATCTATCTCCTCACCTTTCCAACCTCACTTTCCTTCAATCACTTGACCTTTCCAACAACAAATTTCATGGCCAAATTCCCAAAGACTTTGCCCATCTCTCACTTCTCAGTGTCATTAATTTACCTTCAAACAATCTCAGTGGTACACTTCCACCACAGCTGGGCCATCTCCACCGTCTAAAAATATTGGACTTTTCAGCCAATAAAATCACAGGTCAAATTCCTCAATCATTTGGCAATCTATCTTCTCTTGAGAATCTTTCCTTGGCAAGGAACGGTTTGGAGGGTGAGATTCCAGCTGAACTAGGTAATCTTGCCAATCTTTCCACTCTTCAATTGTCAGAAAACAATTTCTCTGGCAAATTTCCCAGTTCAATCTTCAACATCTCTTCATTAGTCTTTTTATCCGTGACAGGCAACCATCTTACGGGTAAGTTACCACAAAATCTTGGCCTTTTTCTTCCAAATTTAGAAAATCTAATTCTTGCAACCAATATGTTTGAAGGGGTAATTCCGAATTCCATATCCAATGCCTCACATCTTCAAGTGATTGACCTTGCTAACAATAAATTTACTGGACCCATACCTCTATTCTACAACTTAAAAAACCTTACCAAGCTCATTCTAGGTCATAATAATCTCTCTTCCACAACCTCTTTGAATTTTCAGTTCTTTAATTCCCTTAGAAACTCCACCAAGTTGCAGGAACTCCGGATCCATGAAAACCATTTGGCTGGGGAGCTTCCAAAATCTTTTGCAAATCTGTCATCCAATCTCCAACATTTCTGTGTTTCTGATAACTTTTTTATTGGCAAAATTCCTCAAGGAATGTACAAATTCCAAAATCTCATATCCTTTTCTTTTGAAATCAATTATTTCGCTGGAGTGTTACCACAAGAATTAGGGGCACTAAATAATCTACAGAATCTTGCGATATACAGAAACAGATTCTCTGGGGAAATTCCAGACATTTTTGGCAATCTCACAAATTTGAATACCCTTGCAATGGGAAATAACCAGCTCTCCGGTAGAATTCACCAAAGTATTGGACAATGCACGAGATTAAGTATTCTTGACTTGGGAATGAATAGACTTGGTGGGACCATACCGAAGGAGATTTTTCAGCCTTCTGGCTTAAGAATCTTGTATTTAGAAGGAAACTCTTTGCAGGGTCCGCTTCCTCCAAAGGTCGGCACCATGAAACAGCTTGAGACCATGGATATTTCTGACAACGAGATGTCAGGGAACATTCCTGTGGAAATAGGGGAGTGTTTTGGCTTGAAGTGGCTAATGATGGCAAGAAACAAATTCAATGGTTCAATCCCAACTAAAATTGGGAATTTAGCATCCCTTGAGACTTTGGATTTATCATTAAACAGTCTCACTGGTTCTATTCCTGAAAGTTTAGAAAAGCTCGAGTATATACAGATATTAAATTTGTCTTTCAACCATTTGGAAGGGGAGGTTCCTGTGAAAGGTCTTTTTACGAACTTTAGCAAATTTGATCTTCAAGGTAACAATCAACTCTGTAGCCTTAACAAGGAAATTGTCCAGAATTTTGGAGTACCCGTGTGTGTTGCTGTCAAAACGAAAAGAAGGATTTTACTCCCTATCATACTTGCAGTTGTTGGTGCTATTGCTTTGTTCATTTCAACGCTCTTTGTATTTTGGACAATGATGTCTAGAGAGAAGAAAAGAAAAGAGGGGAAAACTAGTGTGTCATCTGCCCCTCTTAAAGGGTTGCCTCAAAATATAACTTACGGTGACATTCGGATAGCTACAGACAATTTTGCAGCTGAAAACTTAATTGGAAAAGGAGCTTTTGGCTCTGTGTACAAGGGTGTGTTCAGCTTCAGCGCTGGTGAAACCGCCACCCTTGCTGTCAAAGTCCTCGACCTGCAACAAAGCAAAGCGTCTAAGAATTTCAATGCGGAATGTGAAGCTTTGAAAAATGTTAGGCATCGGAACTTGGTGAAGGTTATCACTTCTTGCTCCAGCCTTGATTATAATGGGGAGGAATTTAAGGCCCTTGTCATGCAATTCATGCCCAATGGAAACTTGAACTTGAAAATACACCCAGGAGATGAAGAGTCAGGATCCATTCTAACCTTGATGCAAAGATTGAGCATTGCCATTGATGTTGCTTCTGCTGTGGACTATTTGCACCATGATTGTGATCCCCCAATAGCTCATTGTGATCTGAAACCTGCCAATGTCCTTCTAGATGAAAACATGACTGCACATGTTGTAGATTTTGGATTGGCAAGGTTTCTGTCTCAAAACACACCAGAGAAGCAGAGTAGCACTCTAGGACTGAAAGGATCAATTGGCTACATTGCCCCGGAATATGGTTTTGGAAGCAAGGCTTCAACTGAGGGCGATGCGTACAGTTTTGGGATCCTAGTGCTAGAGATGTTCACAGGAAAAAGACCAACTGATGAAATGTTCAAGGAAGGATTAAGCCTCAGGGAATTTGTCTCAGGTATGGATGAGAATGAAGTAGTGATGATTGGTGGTGATAGAAGGCTGATTGAGGATTATGGATATTCAACACAAAGCTCAAACCGTGATGATCATAGCAGTGGCTTTGGCAGCAACACACATTGGATGTGTAAAGCTGAGGAGTGCATGGCTGATGTGATAAGAGTTGGTCTGAGTTGCACAGCTGATCAACCCAAAGAACGATGGAACATCAGAGAGGCCTTATCAAAATTGCAAGCTATTAACCACTCTATGCTGCCTTTTTGA 2991 0.4069 MINIPLLLLSCFLFHHFHAISCNTNTDTDVLLSFKSQVTDPKNALSGWSAHSNHCNWYGVTCTKVGNRVQSLNLPGLSLSANLSPHLSNLTFLQSLDLSNNKFHGQIPKDFAHLSLLSVINLPSNNLSGTLPPQLGHLHRLKILDFSANKITGQIPQSFGNLSSLENLSLARNGLEGEIPAELGNLANLSTLQLSENNFSGKFPSSIFNISSLVFLSVTGNHLTGKLPQNLGLFLPNLENLILATNMFEGVIPNSISNASHLQVIDLANNKFTGPIPLFYNLKNLTKLILGHNNLSSTTSLNFQFFNSLRNSTKLQELRIHENHLAGELPKSFANLSSNLQHFCVSDNFFIGKIPQGMYKFQNLISFSFEINYFAGVLPQELGALNNLQNLAIYRNRFSGEIPDIFGNLTNLNTLAMGNNQLSGRIHQSIGQCTRLSILDLGMNRLGGTIPKEIFQPSGLRILYLEGNSLQGPLPPKVGTMKQLETMDISDNEMSGNIPVEIGECFGLKWLMMARNKFNGSIPTKIGNLASLETLDLSLNSLTGSIPESLEKLEYIQILNLSFNHLEGEVPVKGLFTNFSKFDLQGNNQLCSLNKEIVQNFGVPVCVAVKTKRRILLPIILAVVGAIALFISTLFVFWTMMSREKKRKEGKTSVSSAPLKGLPQNITYGDIRIATDNFAAENLIGKGAFGSVYKGVFSFSAGETATLAVKVLDLQQSKASKNFNAECEALKNVRHRNLVKVITSCSSLDYNGEEFKALVMQFMPNGNLNLKIHPGDEESGSILTLMQRLSIAIDVASAVDYLHHDCDPPIAHCDLKPANVLLDENMTAHVVDFGLARFLSQNTPEKQSSTLGLKGSIGYIAPEYGFGSKASTEGDAYSFGILVLEMFTGKRPTDEMFKEGLSLREFVSGMDENEVVMIGGDRRLIEDYGYSTQSSNRDDHSSGFGSNTHWMCKAEECMADVIRVGLSCTADQPKERWNIREALSKLQAINHSMLPF 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01488 996 SUPERFAMILY Protein kinase-like (PK-like) 654 987 IPR011009 -
Phco7g01488 996 SMART serkin_6 678 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01488 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Phco7g01488 996 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Phco7g01488 996 ProSiteProfiles Leucine-rich repeat profile. 531 554 IPR001611 GO:0005515
Phco7g01488 996 SMART LRR_typ_2 434 457 IPR003591 -
Phco7g01488 996 SMART LRR_typ_2 529 553 IPR003591 -
Phco7g01488 996 SMART LRR_typ_2 162 186 IPR003591 -
Phco7g01488 996 SMART LRR_typ_2 138 161 IPR003591 -
Phco7g01488 996 SMART LRR_typ_2 409 433 IPR003591 -
Phco7g01488 996 SMART LRR_typ_2 235 258 IPR003591 -
Phco7g01488 996 SMART LRR_typ_2 282 308 IPR003591 -
Phco7g01488 996 SMART LRR_typ_2 90 113 IPR003591 -
Phco7g01488 996 PANTHER OS04G0122200 PROTEIN 184 988 - -
Phco7g01488 996 Gene3D Transferase(Phosphotransferase) domain 1 763 994 - -
Phco7g01488 996 Gene3D Ribonuclease Inhibitor 280 600 IPR032675 -
Phco7g01488 996 FunFam Leucine-rich repeat receptor-like kinase 26 137 - -
Phco7g01488 996 FunFam LRR receptor-like serine/threonine-protein kinase EFR 649 762 - -
Phco7g01488 996 Gene3D Ribonuclease Inhibitor 23 173 IPR032675 -
Phco7g01488 996 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 763 995 - -
Phco7g01488 996 FunFam LRR receptor-like serine/threonine-protein kinase EFR 301 612 - -
Phco7g01488 996 Pfam Leucine Rich Repeat 93 114 IPR001611 GO:0005515
Phco7g01488 996 Gene3D Ribonuclease Inhibitor 174 279 IPR032675 -
Phco7g01488 996 Pfam Leucine rich repeat 236 295 IPR001611 GO:0005515
Phco7g01488 996 Pfam Leucine rich repeat 117 175 IPR001611 GO:0005515
Phco7g01488 996 Pfam Leucine rich repeat 508 566 IPR001611 GO:0005515
Phco7g01488 996 ProSitePatterns Protein kinases ATP-binding region signature. 684 710 IPR017441 GO:0005524
Phco7g01488 996 ProSiteProfiles Protein kinase domain profile. 678 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01488 996 PRINTS Leucine-rich repeat signature 529 542 - -
Phco7g01488 996 PRINTS Leucine-rich repeat signature 93 106 - -
Phco7g01488 996 SUPERFAMILY L domain-like 24 308 - -
Phco7g01488 996 Pfam Protein tyrosine and serine/threonine kinase 681 899 IPR001245 GO:0004672|GO:0006468
Phco7g01488 996 SMART LRR_sd22_2 138 170 - -
Phco7g01488 996 SMART LRR_sd22_2 282 303 - -
Phco7g01488 996 SMART LRR_sd22_2 529 552 - -
Phco7g01488 996 FunFam Leucine-rich repeat protein kinase family protein 158 299 - -
Phco7g01488 996 ProSiteProfiles Leucine-rich repeat profile. 284 305 IPR001611 GO:0005515
Phco7g01488 996 SUPERFAMILY L domain-like 339 594 - -
Phco7g01488 996 Gene3D Phosphorylase Kinase; domain 1 660 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01488 Phco-Chr7 13988004 13991142 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco7g01488 PK_Tyr_Ser-Thr 4.9e-38 CL0016