LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g01487	ATGGGTGAATTTGGTGTTTCCCACACGAGAAAAAGAAGCACCAGCAGCAACAACAGTGGTGGTAGCGTTGTTGGGTTGGATGTGAAACTGCAGAGCCCTGAAGCATTATTCCATAATAAGATGACGATGATGGCGCATCATAATCATCACCACCGTCCATTGTCATCACCCTTTGATAATGATTCCTGTGCTGGTGATGGCGATGGTCCCACGGCTTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGGAGCTTCTGTTCTCGCTCCTGCTATTGATGGTGGCTGTGCTGCTCCTGCACCTGTAAGGACTTTGCAGCCTTTTGACATTTCTCCCTATACTTCTCCCACCACCACCTCTTCTACCTTCAAACCCTCAGCAGGTGGGATGGCGGCTTCGTTGGGGTTTCCTTTCACAAGTGCACAATGGAGGGAGCTTGAAAGACAAGCCATGATATACAAGTACATGATGGCTTCTGTTCCTGTTCCACCTGATCTCCTCATCCATACTTCACTCACATCCTCTTCTCGCTCTGCCTGCATGGATGGTGGTTTCAATCTAAGGTTGGCTAGTAGCACTGACCCGGAGCCAGGTAGGTGTAGAAGAACAGATGGCAAAAAATGGAGATGTTCAAGAGATGTGGCTCCAAATCACAAGTACTGCGAGCGCCATATGCATAGAGGGCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTAACACCAAGACCACCACTCCCACTAGCATCAACAACAATAGCCACCAAATCAAGAGGCCTCGCCATGAGTCTAATCCTTTTCCTTCTATACCTGATGTTACCGTGGCTATTTCTAACCCCACATCTAGAAAACATGGATCTTCACCCCATTTTCTTGGCTCTTCCACCACTCCTCCATACCTTGAATCTCCCCTCTCTCTTGCTAACTTTAGTCTCAAAGCTGCAAATTTTGACTCCATGGCTTCTGTTTCTGCAAATAAGGAGCCCAGGGGTTTGGAGTGGATGCTGAATGGAGATCCTATTTCCCTGGGTGCTGACTCAGAATGGCAGTCTCTGATGCATAACAAAGTAGGACTGAGCAGCGAGAGTTGTTGTAATAACACCCAGTCTCAGTATCTTAATTCATTTGCACTATACAGCACTGGACTGGATCAGCAACACAGACGCCATCCTTTCATGAATTCTCTGATTGCCCCCATGGAAAATCTCCAACCAGAGAAGACAAGGGGTTTCATTGATGCTTGGTCCAACACAGAAACTGTTGAAAACAATGCCGCCTCCACCACCACCAACAACAACAAGAACTCTGCTGTATCAGTTGGTAAATTATCCCTTTCTTCTCTTGATCTATCAAAGGGGGGTGGTGCTGTGAATGAAGATTTAGGTAATGTTAGCATAGGGTTGGGCCTAATGGAGTCTATTGCAAACACGCACACTGATACCAAAATCTCTCTCTCAAACTGGCTCAACCCAGCACCTTGGGTGGCTTCAACGCTTGGGGGTCCTCTAGCTGAAGTTCTTAGGTCAAGCACAGTCACTGCCACCACCAACACCACCACCAACGAAGCAACCTCCAACACACCCTCACCAGCCACTACACATGTTGAATCTAACAGTCCTCTGGGAACAATGGTGTCATCTCCATCTGGGGTGTTGCAGAAAACGCTTGTTTCATTGTCCGATAGCAGTAGTAATAGCAGCCCAACGGTTGCATCATCAAGGGCCAATTCTGAGATGACCTTGCTCAGGTTTCAACCAAATGCCCTGAGTCCTATTGTTGAGGACGGTTTGTTATATACTGAAAAACCTCTGGTGAACAACCTGTGTTTCTGCTTATGTGATGAGGACTCCTTGCAGCTTTAA	1860	0.4699	MGEFGVSHTRKRSTSSNNSGGSVVGLDVKLQSPEALFHNKMTMMAHHNHHHRPLSSPFDNDSCAGDGDGPTAYMSFTNHINLVSGASVLAPAIDGGCAAPAPVRTLQPFDISPYTSPTTTSSTFKPSAGGMAASLGFPFTSAQWRELERQAMIYKYMMASVPVPPDLLIHTSLTSSSRSACMDGGFNLRLASSTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVNTKTTTPTSINNNSHQIKRPRHESNPFPSIPDVTVAISNPTSRKHGSSPHFLGSSTTPPYLESPLSLANFSLKAANFDSMASVSANKEPRGLEWMLNGDPISLGADSEWQSLMHNKVGLSSESCCNNTQSQYLNSFALYSTGLDQQHRRHPFMNSLIAPMENLQPEKTRGFIDAWSNTETVENNAASTTTNNNKNSAVSVGKLSLSSLDLSKGGGAVNEDLGNVSIGLGLMESIANTHTDTKISLSNWLNPAPWVASTLGGPLAEVLRSSTVTATTNTTTNEATSNTPSPATTHVESNSPLGTMVSSPSGVLQKTLVSLSDSSSNSSPTVASSRANSEMTLLRFQPNALSPIVEDGLLYTEKPLVNNLCFCLCDEDSLQL	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g01487	619	PANTHER	GROWTH-REGULATING FACTOR 5	117	428	IPR031137	GO:0005634\|GO:0006351\|GO:0032502
	Phco7g01487	619	SMART	QLQ_2	137	173	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Phco7g01487	619	MobiDBLite	consensus disorder prediction	8	25	-	-
	Phco7g01487	619	MobiDBLite	consensus disorder prediction	238	254	-	-
	Phco7g01487	619	Pfam	QLQ	138	168	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Phco7g01487	619	Pfam	WRC	196	238	IPR014977	-
	Phco7g01487	619	ProSiteProfiles	WRC domain profile.	195	239	IPR014977	-
	Phco7g01487	619	MobiDBLite	consensus disorder prediction	227	269	-	-
	Phco7g01487	619	MobiDBLite	consensus disorder prediction	512	545	-	-
	Phco7g01487	619	MobiDBLite	consensus disorder prediction	1	25	-	-
	Phco7g01487	619	ProSiteProfiles	QLQ domain profile.	138	173	IPR014978	GO:0005524\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g01487	Phco-Chr7	13982262	13985113	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRF	Phco7g01487		WRC	6.8e-21	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g01487	7	13982262	13985113	Phco7g01487	7	13982262	13985113	ECH