Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01477 ATGATGGAGGGAGATGAGAATATTCAAGCATCAAAGGGAAAAAATGTTGAAAGCTTCGCCTGCTTGGAGGCACCAAGGAAGAAAAACAAGAAGATAGAAAACAAGAGGAGGTTTAGTGATGAACAGATAAGATCACTAGAATGCATATTTGAGACAGAGTCGAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCAAGAGATCTTGGCCTGCAGCCTCGCCAAGTTGCCATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAACGCATAGAGCAAGAATACAGGAAACTCAAGGATGAATATGACAATTTAGCGTCTAGGTTTGAGTCCCTAAAGAAAGAGAAGGAGTCTTTGCAAGTAGAGTTGCAGAAGCTAAGTGATTTGGTGGAATCATCTCATGATGGTGGAAGGGAAGACAAGGGTGCCAAAGAACACAGCATAGAGGATGGTGGTTCAGGCAGTGGATACAGCAGTTGGAAGCCTGAAGTAAAACCAAGGTTTTCAACTGAGGGTTTGGAAGAGAGATTAGGTGTGTATTCAGATGATCAAAATGAGAATAGCATCATAAGGAGTGAGAAATCTGAGGACAAAGGACACCAACTTCTCAGAGTGGATGATAATGATCAGGCTGAGATACCATTAGCATCACTAGAAAAATGGTACAGTAGTGTGGACCCTAGTGGCATCTTGGACCAGTCATGCAGCAGCTCTCAATGGTTAGATTTCTGGACATGA 738 0.4309 MMEGDENIQASKGKNVESFACLEAPRKKNKKIENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVELQKLSDLVESSHDGGREDKGAKEHSIEDGGSGSGYSSWKPEVKPRFSTEGLEERLGVYSDDQNENSIIRSEKSEDKGHQLLRVDDNDQAEIPLASLEKWYSSVDPSGILDQSCSSSQWLDFWT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01477 245 Pfam Homeodomain 35 87 IPR001356 GO:0003677
Phco7g01477 245 Gene3D - 24 98 - -
Phco7g01477 245 CDD homeodomain 35 90 IPR001356 GO:0003677
Phco7g01477 245 FunFam Homeobox-leucine zipper protein ATHB-7 16 89 - -
Phco7g01477 245 Coils Coil 81 129 - -
Phco7g01477 245 SUPERFAMILY Homeodomain-like 25 89 IPR009057 -
Phco7g01477 245 MobiDBLite consensus disorder prediction 167 200 - -
Phco7g01477 245 SMART HOX_1 32 93 IPR001356 GO:0003677
Phco7g01477 245 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Phco7g01477 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 192 IPR045224 GO:0003700
Phco7g01477 245 MobiDBLite consensus disorder prediction 127 200 - -
Phco7g01477 245 Pfam Homeobox associated leucine zipper 89 130 IPR003106 GO:0006355|GO:0043565
Phco7g01477 245 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Phco7g01477 245 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Phco7g01477 245 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Phco7g01477 245 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01477 Phco-Chr7 13856456 13857295 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco7g01477 Homeodomain 4.3e-17 CL0123