Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01387 ATGAGTGGAAATTGTAACGTAGAGTCTGATACTGCTGCTTCTGCTTTGGCTTCAGCCTGTTTCCTGGAGTCGATCCATCTAACAGGAACTCCAAAAGCCTCCAACATGGACGACAGCTTATGTGATATTTTCGACGACAAAGAGTTTGGGAGCGATCACTTTGGTGGGGACGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCCATTTTCCTCCCATTAACGAAGAAGCTGTTGCTATCTCCAAAGAGAACGAGGATGTCTCAAGATTGGTGTCCCAAAAGTCTACCTCGTCAAGTGCTCCACAAGATTATTCCGAAACTGAGTTTGAAACCTCATCAAAAACCAAGAGACAGAAGCTTACTCCTACCACGCCAGAGGAAGCAAACCCAGATGGACAACAGAGGATGTCTCACATCACCGTCGAACGCAACCGGAGAAAGCAAATGAATGAACACTTGTCCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAACGGGGAGATCAAGCGTCCATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGCCAAGAAACAAAGGAAAGTTTACAGCGAAGTCCTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCCTCACCTCTGAGTCCTCGGAAACCTCCTCTGAGCCCGAGACTAAACTTGCCCATTAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGCAAGGCTACAACAACATGATTTCACCAACCATGTCCAACTCTCTTGACCCTTCTCCCACTTCTTCTGCTAATTCCTCCATCAACGACAACATCAACGAGCTTGTTGCCAACTCCAAATCCGCCACTGCTGATGTGGAGGTCAAGTTTTCTGGGCCCCACGTTCTTCTCAAAACGGTGTCTCAACGAATTCCCGGACAGGCTCTGAAGATAATCACAGCACTTGAAGATCTCGCGCTAGAAATCCTCCATGTCAACATTAACTGTGCTGCTGATGATATCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCAGAAGAATTGGCTCAACAAATCCAGCAAACATTCTGCTAA 1122 0.4733 MSGNCNVESDTAASALASACFLESIHLTGTPKASNMDDSLCDIFDDKEFGSDHFGGDDLFAILESLESDFTHFPPINEEAVAISKENEDVSRLVSQKSTSSSAPQDYSETEFETSSKTKRQKLTPTTPEEANPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQGYNNMISPTMSNSLDPSPTSSANSSINDNINELVANSKSATADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNINCAADDIMLNSFTIKIGIECQLSAEELAQQIQQTFC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01387 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 210 IPR036638 GO:0046983
Phco7g01387 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
Phco7g01387 373 MobiDBLite consensus disorder prediction 215 244 - -
Phco7g01387 373 Gene3D - 128 201 IPR036638 GO:0046983
Phco7g01387 373 PANTHER TRANSCRIPTION FACTOR FAMA 39 372 IPR044283 GO:0003700|GO:0010052
Phco7g01387 373 MobiDBLite consensus disorder prediction 245 276 - -
Phco7g01387 373 MobiDBLite consensus disorder prediction 93 111 - -
Phco7g01387 373 CDD bHLH_AtFAMA_like 139 210 - -
Phco7g01387 373 FunFam Transcription factor SPEECHLESS 128 202 - -
Phco7g01387 373 MobiDBLite consensus disorder prediction 93 140 - -
Phco7g01387 373 Coils Coil 180 200 - -
Phco7g01387 373 SMART finulus 142 193 IPR011598 GO:0046983
Phco7g01387 373 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Phco7g01387 373 MobiDBLite consensus disorder prediction 209 276 - -
Phco7g01387 373 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01387 Phco-Chr7 12652411 12655826 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco7g01387 HLH 8.7e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01387 7 12652411 12655826 Phco7g01387 7 12652411 12655826 ECH