Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01378 ATGGACAAGAAGCTGCCCCTTTTGTACATTTTTTCAGCAGTGTTGGTTAGTGTTGTGGCTGAACCAGTGGAAGATAAGCAGGCTCTGCTTGATTTCCTTGACAGCATTAATCACTCTCCTCATGTCAACTGGGATGCGAACACTTCTGTTTGCCAAAGCTGGAGAGGAGTGACTTGCAACTCTGACAAGTCTCGAGTCATAGCACTTCGATTACCAGGAGCTGGTTTGAGTGGTCCAATCCCACCCAACACCCTGAGTCGCCTCTCCGCACTTGAGATCGTGAGTCTTAGATCGAATGGTATATCAGGCCCTTTCCCTGATGGATTCTCTGAGCTGAAAAATTTGACCAGTCTCTATCTTCAATCTAACAAGTTTTCTGGGCTACTACCATTGGATTTTTCAGTTTGGAATAATCTTAGTGTTGTCAATTTATCCAGCAATTATTTTAATGGGAGTATCCCTTTTTCAATTTCAAATCTGACTCATCTCGCTTCATTAGTCCTTGCCAACAACTCCCTTACGGGTGAGATTCCTGATCTCAATATTCCTAGCCTGCAGGAGCTGAATTTAGCCAACAATAACCTTAGTGGGGTTGTGCCTAAATCTCTTCTTAGATTTCCTAGTTCAGCCTTTGCTGGTAATAATCTCACATCTGCAACAGCACTTCCCCCGGCCTTTCCTGTGCAACCACCGGCTATTCCTCCCGCAGAAAAATCCAAAAGACTCAGTGAACCTGCATTGTTGGGTATCATCATTGGTGCTTCCGTCCTGGGGTTTGTGGTGATTGCAGGTTTCTTGATTGTGTGCTGCTATCAGAATACAGATGTGGATGTGCAACCAACGAAATCCCAGAAAAAACAAGCCAATCTGAAAACACAATCTTCTGGAAGTCAGGACAAAAACAACAAAATAGTCTTCTTTGAGGGTTGCAATCTTGCATTTGATCTAGAGGACCTGTTGAGAGCATCTGCTGAGATTCTTGGCAAGGGCACCTTTGGCATGACATATAAAGCTGCTCTAGAGGATGCAACCACTTTGGTGATCAAGAGGTTGAAGGAGGTCACAGTTGGAAAACGAGATTTTGAACAGCAGATGGAGCTGGTGGGGAGAGTAAAGCACGACAATGTGGATGCAGTGAGGGCATATTACTACTCAAAGGAGGAGAAACTCATAGTATATGATTACTATCAACGAGGCAGCGTTTCTGCAATGTTACATGGCAAAGGAGGGGAAGGTAGAAGTACTTTAGACTGGAATAGCCGTTTGAGAATTGCAATTGGTGCAGCGAGAGGCATTGCTCACATCCACGCACAACATGGAGGGAAACTCGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACGTACAAGGATACGGATGCATATCTGATATTGGCTTGGCAACATTGATGAGTCCAGTACCTGTCCCAGCCATGAGAACAACTGGATACCGTGCACCAGAAATAACTGACACGCGCAAAGCAACCCAGGCATCTGATGTCTACAGTTTTGGGGTGCTACTACTCGAGCTTTTGACTGGGAAATCGCCCATAAACAGCACAGAAGGTGAGCAGGTTGTCCACTTGGTTAGATGGGTGAATTCTGTTGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTAGAGCTGTTGAGGTATGCCAACATAGAGGAAGAAATGGTGGGGATGCTACAAATAGGAATGGCTTGTGCTGTAAGAATACCTGATCAGAGACCAAAGATGCCTGATGTGGTGAAAATGGTGGAAGAGATTCGTCGTGTAAATACGCCAAATCTACCATCAGCGGAGTCTCGGTCAGAAGTTTCTACACCCACACCTCGTGCAGTGGACATACCTTCTACCTCTGTTCAACAATGA 1881 0.4508 MDKKLPLLYIFSAVLVSVVAEPVEDKQALLDFLDSINHSPHVNWDANTSVCQSWRGVTCNSDKSRVIALRLPGAGLSGPIPPNTLSRLSALEIVSLRSNGISGPFPDGFSELKNLTSLYLQSNKFSGLLPLDFSVWNNLSVVNLSSNYFNGSIPFSISNLTHLASLVLANNSLTGEIPDLNIPSLQELNLANNNLSGVVPKSLLRFPSSAFAGNNLTSATALPPAFPVQPPAIPPAEKSKRLSEPALLGIIIGASVLGFVVIAGFLIVCCYQNTDVDVQPTKSQKKQANLKTQSSGSQDKNNKIVFFEGCNLAFDLEDLLRASAEILGKGTFGMTYKAALEDATTLVIKRLKEVTVGKRDFEQQMELVGRVKHDNVDAVRAYYYSKEEKLIVYDYYQRGSVSAMLHGKGGEGRSTLDWNSRLRIAIGAARGIAHIHAQHGGKLVHGNIKASNIFLNVQGYGCISDIGLATLMSPVPVPAMRTTGYRAPEITDTRKATQASDVYSFGVLLLELLTGKSPINSTEGEQVVHLVRWVNSVVREEWTAEVFDVELLRYANIEEEMVGMLQIGMACAVRIPDQRPKMPDVVKMVEEIRRVNTPNLPSAESRSEVSTPTPRAVDIPSTSVQQ 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01378 626 MobiDBLite consensus disorder prediction 597 626 - -
Phco7g01378 626 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Phco7g01378 626 Pfam Leucine Rich Repeat 184 204 IPR001611 GO:0005515
Phco7g01378 626 PANTHER OS05G0588300 PROTEIN 8 602 - -
Phco7g01378 626 MobiDBLite consensus disorder prediction 598 626 - -
Phco7g01378 626 Gene3D Phosphorylase Kinase; domain 1 285 395 - -
Phco7g01378 626 SUPERFAMILY Protein kinase-like (PK-like) 325 590 IPR011009 -
Phco7g01378 626 ProSiteProfiles Protein kinase domain profile. 321 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01378 626 FunFam Probable inactive receptor kinase RLK902 22 181 - -
Phco7g01378 626 Gene3D Transferase(Phosphotransferase) domain 1 397 609 - -
Phco7g01378 626 FunFam pollen receptor-like kinase 1 290 395 - -
Phco7g01378 626 Pfam Protein kinase domain 324 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01378 626 ProSitePatterns Protein kinases ATP-binding region signature. 327 358 IPR017441 GO:0005524
Phco7g01378 626 SUPERFAMILY L domain-like 25 206 - -
Phco7g01378 626 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 396 600 - -
Phco7g01378 626 Gene3D Ribonuclease Inhibitor 23 227 IPR032675 -
Phco7g01378 626 ProSiteProfiles Leucine-rich repeat profile. 184 205 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01378 Phco-Chr7 12516950 12519606 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco7g01378 Pkinase 3.6e-30 CL0016