Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01371 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCATCCATCTCTGCTCTGAACCAGGAAGGCCACTCTCTACTGTCATGGCTTTCAACCTTCAACTCCTCCAACTCTATCTCTGCCTTCTCTTCATGGGATCCGACTAACAAAGATCCTTGTACATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGAGATCATAATAACATCCATAGATATGCGTAGCAGCTTCCCCACGCAGCTCCTTTCTTTTGGTCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACTGGTGAGATTCCAGGTTCAGTGGGAAACTTGTCCTCCTTGGTCACTTTGGACCTTAGCTTCAATGCTTTGTCAGGAAGCATTCCAGAAGAAATAGGAATGCTATCTAAGCTGCAGTTGTTACTGTTGAACTCCAATTCCTTGAAGGGTGGAATTCCAACTACAATTGGAAACTGTTCAAAGCTTCAGCATCTGGCACTTTATGACAACCAGCTCTCTGGAATGATACCTGGAGAAATAGGCCTGTTGAGGACTCTTGAAACTCTTAGAGCAGGAGGTAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCAGTTACCGGGATTTCTGGGGAGATTCCACCGAGTATAGGGGAGCTTAAAAATCTCAAGACGCTTTCAGTCTACACGGCACATCTCAAAGGTCATATCCCAGCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAACATTCCTTATGAATTAGGCTCCATGCAAAGCCTCAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGCACCATTCCAGAAAGTCTTGGGAACTGTACAAATCTCAAAGTTATAGATTTCTCTTTGAATTCTCTGGGGGGTCAGATACCTGTGACTCTCAGTAATCTACTCTTACTGGAGGAGTTTCTTTTGTCTGATAATAGTATTTATGGAGAAATACCTTCCTATGTTGGCAACTTTTCCAGGCTAAAGCAACTTGAATTGGATAACAACAAGTTCTCCGGGAAGATTCCACCTGTTATGGGGCAACTGAAGGAACTGACCCTCTTTTATGCCTGGCAGAATCAACTGGATGGAAGTATACCAACAGAGCTATCTAACTGTGATAAACTTGAAGCACTTGATCTTTCACACAATTTCCTCACTGGCTCCATTCCAAATGCACTCTTTCATCTGCCGAATTTGACTCAGTTGTTGCTAATATCAAACAGACTTTCAGGTCAAATTCCAGCTGATATTGGCAGCTGCACCAGTTTGATCAGGTTACGGCTGGGATCAAACAACTTTACTGGTCAAATTCCACCAGAAATAGGTCATTTAAGAAGTTTGAGCTTTCTTGAGTTGTCAAATAATCTACTCAGTGGAGATATTCCCTCTGAGATAGGTAACTGTGCTCATCTAGAATTGCTTGACTTGCACAGCAATGTGCTGGAAGGAACCATTCCTTCCTCATTGCAATTCCTAGTTGGTCTTAATGTGTTAGATCTTTCTGCAAATAGAATAATTGGAAGTGTTCCTGAGAATTTGGGCAAGCTTAAATCTCTAAATAAGTTTATTTTAAGTGGAAACCTTATCTCTGGTGTGATCCCAGGGACACTGGGGCTGTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGGTCTATTCCAGATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTAGTGGCCCCATTCCAGAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCACTGTACTGGTTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTATAATAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCCGAGATCTACCCTCCGCTTCATTTTCTGGTAACCCTGACCTTTGCATTATTAAGTGCCATACAAGTGAAAATGGCCAAGGCTTCAAGTCAATGAGAAATGTTATTGTCTACACTTTCCTTGGGGTTGTTTTAGTTTCTATTTTTGTCACTTGTGGAGTAATTTTAGCTTTCCGGATTCATGGGGGACACTTTGGCAGGAATTTTGATAGTGATAAAATGGAATGGGCTTTCACTCCATTCCAGAAAGTCAACTTCTCCATCGATGACATTTTAACTAAGTTGTCAGAATCAAACATTGTCGGAAAGGGTTGCTCAGGAATTGTTTATCGCGTAGAGACTCCAACGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACACAAGAATATAGTGAGACTTTTAGGATGCTGTGACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGCAATGGAAGTTTGTTTGGACTGCTTCATGAAAAGAGATTGTTCTTGGATTGGGATGCCAGGTATAAGATTATACTGGGAGCAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCACCGAGACATTAAGGCTAACAACATCTTGGTAGGTCCACACTTTGAAGCTTTTCTTGCGGATTTTGGTCTTGCAAAACTAGTGAGTTCCTCAGAGTGTTCAGGGGCCTCTCATACAGTTGCAGGTTCTTATGGATACATTGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGTTTCGGTGTTGTACTTCTTGAGGTCTTAACGGGGATGGAACCTACTGATAACAGGATTCCAGAGAGTGCTCACATTGTCACATGGGTTAGCAACGAAATCCGAGAGAAAATAAGGGAATTTACATCTATCCTTGATCAGCAACTAGTATTGCAGAGTGGAACAAAAACCTCTGAGATGCTTCAAGTTCTAGGAGTAGCTCTCCTCTGTGTGAATCCATCACCAGAAGAAAGGCCTACTATGAAAGACGTAGCAGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTCGAAAAACCAAATTTTCTCCATAAAGGCATGGTTGCGAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATTATAGAATCAACATCTTCTTCTTCTTCTTAG 3264 0.4139 MSSNALTLFILFLNISLCPSISALNQEGHSLLSWLSTFNSSNSISAFSSWDPTNKDPCTWDYITCSKEGFVSEIIITSIDMRSSFPTQLLSFGHLTTLVISNGNLTGEIPGSVGNLSSLVTLDLSFNALSGSIPEEIGMLSKLQLLLLNSNSLKGGIPTTIGNCSKLQHLALYDNQLSGMIPGEIGLLRTLETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGISGEIPPSIGELKNLKTLSVYTAHLKGHIPAEIQNCSALEDLFLYENQLSGNIPYELGSMQSLRRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLGGQIPVTLSNLLLLEEFLLSDNSIYGEIPSYVGNFSRLKQLELDNNKFSGKIPPVMGQLKELTLFYAWQNQLDGSIPTELSNCDKLEALDLSHNFLTGSIPNALFHLPNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGQIPPEIGHLRSLSFLELSNNLLSGDIPSEIGNCAHLELLDLHSNVLEGTIPSSLQFLVGLNVLDLSANRIIGSVPENLGKLKSLNKFILSGNLISGVIPGTLGLCKDLQLLDISNNRITGSIPDEIGHLQGLDILLNLSWNSLSGPIPETFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNSFSGSLPDTKFFRDLPSASFSGNPDLCIIKCHTSENGQGFKSMRNVIVYTFLGVVLVSIFVTCGVILAFRIHGGHFGRNFDSDKMEWAFTPFQKVNFSIDDILTKLSESNIVGKGCSGIVYRVETPTKQIIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPHFEAFLADFGLAKLVSSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLLEVLTGMEPTDNRIPESAHIVTWVSNEIREKIREFTSILDQQLVLQSGTKTSEMLQVLGVALLCVNPSPEERPTMKDVAAMLKEIRHENDDFEKPNFLHKGMVANPKAAVHCSSFSRSCEPLIIESTSSSSS 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01371 1087 SMART serkin_6 762 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01371 1087 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Phco7g01371 1087 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Phco7g01371 1087 PRINTS Leucine-rich repeat signature 622 635 - -
Phco7g01371 1087 PRINTS Leucine-rich repeat signature 408 421 - -
Phco7g01371 1087 Pfam Protein kinase domain 764 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01371 1087 Gene3D Ribonuclease Inhibitor 403 692 IPR032675 -
Phco7g01371 1087 ProSiteProfiles Protein kinase domain profile. 762 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01371 1087 ProSiteProfiles Leucine-rich repeat profile. 407 430 IPR001611 GO:0005515
Phco7g01371 1087 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Phco7g01371 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Phco7g01371 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Phco7g01371 1087 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Phco7g01371 1087 SMART LRR_typ_2 285 309 IPR003591 -
Phco7g01371 1087 SMART LRR_typ_2 622 641 IPR003591 -
Phco7g01371 1087 SMART LRR_typ_2 477 501 IPR003591 -
Phco7g01371 1087 SMART LRR_typ_2 357 381 IPR003591 -
Phco7g01371 1087 SMART LRR_typ_2 429 453 IPR003591 -
Phco7g01371 1087 SMART LRR_typ_2 645 678 IPR003591 -
Phco7g01371 1087 SMART LRR_typ_2 140 164 IPR003591 -
Phco7g01371 1087 SMART LRR_typ_2 525 549 IPR003591 -
Phco7g01371 1087 SMART LRR_typ_2 116 139 IPR003591 -
Phco7g01371 1087 Gene3D Ribonuclease Inhibitor 186 400 IPR032675 -
Phco7g01371 1087 Gene3D Phosphorylase Kinase; domain 1 734 840 - -
Phco7g01371 1087 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Phco7g01371 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Phco7g01371 1087 SUPERFAMILY RNI-like 293 660 - -
Phco7g01371 1087 SUPERFAMILY L domain-like 36 395 - -
Phco7g01371 1087 Gene3D Transferase(Phosphotransferase) domain 1 841 1057 - -
Phco7g01371 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 738 840 - -
Phco7g01371 1087 ProSitePatterns Protein kinases ATP-binding region signature. 768 796 IPR017441 GO:0005524
Phco7g01371 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 841 1055 - -
Phco7g01371 1087 SUPERFAMILY Protein kinase-like (PK-like) 758 1057 IPR011009 -
Phco7g01371 1087 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Phco7g01371 1087 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Phco7g01371 1087 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 429 1038 - -
Phco7g01371 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01371 Phco-Chr7 12408455 12412100 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco7g01371 Pkinase 4.3e-43 CL0016