Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01341 ATGATGGATCATCAACCAACTGATTTAGGTTGGCTTTACTATATTTATCTGTTGACTGTGGCAACAAAACTCAGCACTGTATCTAGACATAGTCATCCTTTAAGGTTCAACAAGATTTTGTCGCTGAGCAACTCTGCCTGCTGTACTGTTTCTCAAGGTGGGAAAGTCATGTTTTTTATACAGCCTAAAATTCTGGGTGAATTGTATAACAGGGGAATCATGTCATTAGTTAGGTCTGTTGATCTAGCTCCTACATCGTATAAAAATGCCAAGCTCTTCTCACTAAAGGGAACTGATGTTAGACCAGGTTTGTCCTCCCAAATTTTTGGTCCTGATAAGCATCGGAGCATGGACATGACAGATTCTTACTCCAGCGAGTGTTATGAGAAGTATTTCCACGACTGTCAAACAGAAGAACTGATAGAACCATCTAATTCCAGCATCTCTGGAAGTTCAATCCCCCCTGATGTAGCCTCTTCTTACCAGCTTACAGCCAGTTCAGAAGCTTCTGTGGTTGCCAATAACCCATTTGATTGTTCTTTCATGTCTACAATGCATCATGATGGTTATCAGTCAAACTTTGGATCAGATTTGATGGATAATGGAAGCCTCGATTCCCGTAAAAATGATGGTCTAATGAGTTTAAAACTACAAGCATTGGAGAGGGCATTGCTTGATGATAGTGAGGCTGAGGAGGAGGAGCTGGAAGAGGAAGACATATTTGAGGCTGTTCAAAGCATGGAAATTGATCCGGACATTGCTGAGTGGGCTGATTCCATGCAGAATGTAATCCTCCATGACTCACCAAAGGAGTACTCTTCTTCAGATTCCAGCATCAGCAGCATCAGCAGCACCAAAGAAATATCACAAACTTCTCAGACCCCCAAGCAGCTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAACGAAGTGGAAGGATCATCCATGATAAACAATCTCAGGCAGATGGTCTCAATTCAAGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTTGAGGGACTTGCAGCTCGCCTAGCCGAATCCGGCAAAAGTATTTACAAAGCTCTGAGATGCAAGGAACCTCCTTCTTCAGACCGTCTAGCAGCTATGCAGATACTGTTTGAGGTTTGCCCATGTTTCAAATTTGGATTTATTGCTGCTAACAATGCAATTACAGAAGCAGTGAAAGATGAGATGAACATTCATATCATAGACTTTGACATCAATCAAGGAAGCCAGTACATTAATCTAATCCAAACACTTGCTTCAAGGTCAAGTAAGCCACCCCATGTTAGATTGACTGGTGTTGATGATCCTGAGTCCGTGCAGCGATCTGTTGGAGGCCTAAAGAACATAGGACAAAGACTAGAACAACTAGCAGAGGCACTTGGTTTACCATTTGAGTTCCGAGCAGTGGCATCAAGGACTTCCATTGTCACCCCATCAATGCTCGACTGTAGTCCTGGGGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCATCATATGCCTGATGAGAGTGTTTCTACAGTAAACGAACGGGACCAACTTCTTCGGTTGGTGAAGAGCTTGAACCCAAAGCTTGTGACAGTTGTGGAGCAAGATGTGAACACAAACACCACCCCCTTCTTGCCTAGATTTGTTGAATCCTACAATTACTACTCTGCTGTGTTTGAGTCACTTGATGTTACTCTTCCTAGAGAAAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCCAGGGACATTGTCAATGTTGTTGCATGTGAGGGCGAGGATAGGATAGAACGGTATGAAGTGGCAGGAAAATGGAGAGCAAGGATGACAATGGCTGGCTTCACTTCATCTCCAATGAGCACAAATGTGACTGATGAAATCCGAAAACTCATTAAGGTGATGTATTGTGACAGGTACAAGATAAAGGAGGAAATGGGTGCACTTCACTTTGGTTGGGAAGACAAAAACTTGATCGTTGCATCGGCATGGAAGTTACCAAGATAA 2010 0.4313 MMDHQPTDLGWLYYIYLLTVATKLSTVSRHSHPLRFNKILSLSNSACCTVSQGGKVMFFIQPKILGELYNRGIMSLVRSVDLAPTSYKNAKLFSLKGTDVRPGLSSQIFGPDKHRSMDMTDSYSSECYEKYFHDCQTEELIEPSNSSISGSSIPPDVASSYQLTASSEASVVANNPFDCSFMSTMHHDGYQSNFGSDLMDNGSLDSRKNDGLMSLKLQALERALLDDSEAEEEELEEEDIFEAVQSMEIDPDIAEWADSMQNVILHDSPKEYSSSDSSISSISSTKEISQTSQTPKQLLYECAIALSEGNEVEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDEMNIHIIDFDINQGSQYINLIQTLASRSSKPPHVRLTGVDDPESVQRSVGGLKNIGQRLEQLAEALGLPFEFRAVASRTSIVTPSMLDCSPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVESYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVTDEIRKLIKVMYCDRYKIKEEMGALHFGWEDKNLIVASAWKLPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01341 669 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 271 661 IPR005202 -
Phco7g01341 669 Pfam GRAS domain family 296 666 IPR005202 -
Phco7g01341 669 ProSiteProfiles GRAS family profile. 286 666 IPR005202 -
Phco7g01341 669 Coils Coil 218 238 - -
Phco7g01341 669 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01341 Phco-Chr7 12142174 12144348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco7g01341 GRAS 1.8e-136 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01341 7 12142174 12144348 Phco7g01341 7 12142174 12144348 ECH
Phco2g00745 2 7960937 7962712 Phco7g01341 7 12142174 12144348 PCT