Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01340 ATGGAGGATTCTTCAGCAGGTGAAGACCCTAAGACTTGTCCCCGCGGCCACTGGAGACCTGCTGAGGATGAAAGGCTTAGACAACTTGTTGAACAATATGGTGCTCAAAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGACCCAAGAATCAACAGAAGACCGTTCACAGAAGAGGAAGAAGAGAGGTTACTCGCAGCTCATCGAATTCACGGGAACAAGTGGGCCCTCATAGCGAGGCTTTTCCCTGGTCGAACTGATAATGCTGTGAAGAACCACTGGCACGTTATAATGGCGAGAAAGCAAAGGGAACAATCGAAGTTATGTGGGAAAAGAAGTTTCCAAGATGTTTACAACGATTCCAACACGTTCCTCGAGAAGAGAACACCACAGTCTCATCAAGACCTATTGTTTAGTACGAGATTTGGATTGGAGAATGGAACATTCTTTGACTTTCGGAGCCTCGATAATAATAAGGATAATAACAATAATAATAGTAATAATAATAGGATAGTTGCAGATACTACTCCCTCTAGTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACAACCACAAACGGTTCTACTGTAGTGGATAGGAAAGGAGGGAGAGACTATTTCAACAGTTCTTCTTGCTCTTCTAGTGTTTATCTCTCAGAATGTTCCAGAAGCTCAGATAGATCGTTTCTCAGAATTTATCCAAATCCTGCATTCTCTCTTCCCAACTACAAGAGGGTTGTTCCAACAAGTCCTTTTAGTTTCCTTGGTTCTGATAATAATGGAAGGATAAAGAGGGACTTTTTGATGAGTTTTTGCGATAATAACTCATCCACATTCACCAAGTTGAAGGCTTCCACAGAGAAAGATCACCAACAACAAACAACTGAAGATGAGACCATTATCGAACCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA 1005 0.4179 MEDSSAGEDPKTCPRGHWRPAEDERLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNTFLEKRTPQSHQDLLFSTRFGLENGTFFDFRSLDNNKDNNNNNSNNNRIVADTTPSSSLASWNFASVPTTTNGSTVVDRKGGRDYFNSSSCSSSVYLSECSRSSDRSFLRIYPNPAFSLPNYKRVVPTSPFSFLGSDNNGRIKRDFLMSFCDNNSSTFTKLKASTEKDHQQQTTEDETIIEPKEVPFIDFLGVGVSSS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01340 334 CDD SANT 18 59 IPR001005 -
Phco7g01340 334 Pfam Myb-like DNA-binding domain 18 78 - -
Phco7g01340 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco7g01340 334 MobiDBLite consensus disorder prediction 1 20 - -
Phco7g01340 334 FunFam MYB transcription factor 15 66 - -
Phco7g01340 334 Gene3D - 15 66 - -
Phco7g01340 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 61 IPR017930 -
Phco7g01340 334 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Phco7g01340 334 SMART sant 14 63 IPR001005 -
Phco7g01340 334 SMART sant 66 114 IPR001005 -
Phco7g01340 334 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Phco7g01340 334 PANTHER MYB PROTEIN-RELATED 15 183 - -
Phco7g01340 334 Gene3D - 69 149 - -
Phco7g01340 334 CDD SANT 69 109 IPR001005 -
Phco7g01340 334 FunFam MYB transcription factor 68 138 - -
Phco7g01340 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01340 Phco-Chr7 12119342 12120642 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco7g01340 Myb_DNA-bind_6 4.8e-17 CL0123