Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01328 ATGAATGATGGGTCATTGCTACAAGTGTCTGTTTCTGAAGTGATCACCACCAACGACGCCGAAACTGGGCGAAATATAGCCCACGCCACCGTGTTTGGGTCAGTCGGAGCCTTCATCATGGAAGTCACAAAAGATCCTAACTCAAACCCGGGTCACTTCGACGATTCAGATTCCGAACTCGAACTCTACACTATCCCAAGCTCTTCAAGATGGTTCGCGTGGGACGAAATTCACGAAACCGAGAGAACAGCGTTCAAGGAATTCTTCGACGCGAGCTCGATTTCGAGAACCCCCAAGATATACAAAGAATACAGAGACTTCATCATCAACAAGTACAGGGAAGAGCCTTCCAGGAGGCTCACATTCACCGAGGTGAGAAAATCGCTGGTTGGTGACGTCACGTTTTTGCACAAGGCGTTCCTCTTCCTGGAGAATTGGGGTTTGATCAACTACGGCGCGCCCTCTGCTGCAGACGTGGAGAAGGAGGAGGAGGAGGAGGAGGAACCGTGCAAGGTTCGCCTCGAAGAAGGAACCCCCAATGGGATTCGCGTGGTGGCCACGCCGAACTCGTTGAAGCCGATCTTGGTGCCTCGCGGTGCGAAGACTGGTGGAAATGCGACCGCGGCTTCTCTCAAATTGCCACCGCTCGCCTCCTATTCGGATATTTATGGAGATTTGATTAGGCAGAAAGAGGGGAACTGTGGGCTTTGCGGTGGCAAATGTGGTTCAGGACATTACAGATGTACCCAGGATAATTTCATTATTTGTGCAAATTGTTTCAAAAGTGGGAATTATGGGGAGAAAAGGTCTTCAGAGGATTTCGTATTGAGTGAGTCAAGTGAAAATAGTGGCAAACATGACACTGTCTGGACCGAGGGAGAAATTCTTCTCCTTTTGGAATCTGTTTTGAAGCATGGGGATGACTGGGAACTTGTTGCTCAGAATGTCCAAACCAAGACTAAACTTGATTGTATCTCAAAACTCATTGAGCTGCCTTTTGGGGAGCTCATGTTGGGCCCTGCTCACAGAAATGTCAACATTAATAGTGCTAATGGCATCATGGTGAACAATGCAAAACAAGTTCAGTCATCTTCATCTGACAACCAAGAAATTTCAAAGACAAAGGATCAACCTCCTGAGCTTACAAATGAAAATGAGCAGAATGGGGATGCTGTGAAGGAAAGTCCTTCAAAAAGACAGCGTGTTACTCCCCTGTCAGATTCCAGTGGTTCACTAATGAATCAGGTGGGACTGATCTCTAATGTGGTTGACCCTCATATCACAGCTGCTGCAGCTGATGCTGCTGTTTCAGCTCTTTGTGATGAGAATTTGTGTCCAAGGGATATATTTGATGTTGAAGAAGATTCAGAAAGAGATCTTGTGGGTGAAGGTTTAGAGATGGAGAGGTCCTCTCTAACAGAAATACCTTTGCCACTGCGTGTAAGAGCTGCCACTGCAACTGCTCTTGGAGCTGCTGCTGCTCGAGCAAAGTTGTTGGCTGACCAGGAAGTCAGAGAGATTGAACATTTAGTAGCAACTATAATTGAAGCTCAGATCAATAAATTGCTGTACAAGGTTAAACATTTTGACGATCTGGAGCTGTTGATGGAAAAGGAACATGCTGAAATGGAAAATATAAAAGATTCTATCTTGACTGAACGGATTGATGTGTTAAGGAGAACATTTAGATCTGGAATCACCAGATGGAAGGATTATTCTTATGTAAAATCTTAG 1734 0.4567 MNDGSLLQVSVSEVITTNDAETGRNIAHATVFGSVGAFIMEVTKDPNSNPGHFDDSDSELELYTIPSSSRWFAWDEIHETERTAFKEFFDASSISRTPKIYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLHKAFLFLENWGLINYGAPSAADVEKEEEEEEEPCKVRLEEGTPNGIRVVATPNSLKPILVPRGAKTGGNATAASLKLPPLASYSDIYGDLIRQKEGNCGLCGGKCGSGHYRCTQDNFIICANCFKSGNYGEKRSSEDFVLSESSENSGKHDTVWTEGEILLLLESVLKHGDDWELVAQNVQTKTKLDCISKLIELPFGELMLGPAHRNVNINSANGIMVNNAKQVQSSSSDNQEISKTKDQPPELTNENEQNGDAVKESPSKRQRVTPLSDSSGSLMNQVGLISNVVDPHITAAAADAAVSALCDENLCPRDIFDVEEDSERDLVGEGLEMERSSLTEIPLPLRVRAATATALGAAAARAKLLADQEVREIEHLVATIIEAQINKLLYKVKHFDDLELLMEKEHAEMENIKDSILTERIDVLRRTFRSGITRWKDYSYVKS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01328 577 MobiDBLite consensus disorder prediction 360 409 - -
Phco7g01328 577 SMART sant 286 334 IPR001005 -
Phco7g01328 577 PANTHER SWI/SNF COMPLEX-RELATED 43 557 - -
Phco7g01328 577 Pfam Myb-like DNA-binding domain 290 328 IPR001005 -
Phco7g01328 577 FunFam SWI/SNF complex subunit SMARCC2 isoform c 69 157 - -
Phco7g01328 577 Gene3D - 286 334 - -
Phco7g01328 577 Pfam SWIRM-associated region 1 487 561 IPR032451 -
Phco7g01328 577 SUPERFAMILY Homeodomain-like 60 155 IPR009057 -
Phco7g01328 577 Coils Coil 529 549 - -
Phco7g01328 577 SUPERFAMILY Homeodomain-like 285 340 IPR009057 -
Phco7g01328 577 ProSiteProfiles SANT domain profile. 285 336 IPR017884 -
Phco7g01328 577 Pfam SWIRM domain 66 151 IPR007526 GO:0005515
Phco7g01328 577 CDD SANT 290 327 IPR001005 -
Phco7g01328 577 Gene3D - 69 155 IPR036388 -
Phco7g01328 577 ProSiteProfiles SWIRM domain profile. 63 160 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01328 Phco-Chr7 11954858 11959479 Dispersed