Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g01327 | ATGTACCCATTTTTTAAGCACACGAAAGGTCCTCACTTTCCTCTTTCCTATTGCTCTCTTCTCCTAAACCACTGTTTATCTCAAAAATCTCTTAATTTTGTCAAAGTCGTGCATGCCCATTTCATCAAACTGGGTCTTAACACCTACACCTATTTGGGTAATCGCTGTCTCAATCTTTACTCGGAGGTCGGCCACGTCAATGATGCACTGAAGGTGTTTGACGATATTTCACACAAGAACTCCACGTCCTGGAACATTTTCTTAAAGGGGCTGCTGAAAAGTGGCCAGCTTGGCAAGGCCTTCCACGTGTTTGATGTAATGCCTGCTAGAGATGTTGTTACTTGGAACTCCATGATTTCGGGTTATGCTTATTTTGGGTTTTTAAGTCATGCATTGGAGCTTTTTGTTGAAATGCAAGGGACTGGTGTGAGACCAAGTGGGTTCACTTTCTCCATTGTGATGTCACTCGTGTCAAGTCCCTCTCATGCTAAGCAGATTCATTGTAGGATGATCAGAAGTGAGATGGATTTGGATAATGTAGTTCTTGGGAATTCGTTAATAACAATGTATGGAAAGCTTGGTCTGGTTGAATATGCTTTTGGTGTGATAATGACTATGAAACAGTTTGATGTTATATCGTGGAACTCTTTGATCTGGGCCTGTCAAAGAGCTGGGCACCATGAGCAGGCTCTGGAGCTGTTCTATCAGATGAGAGATGCCGACTTTTTACCCGATCAGTTTACATGTTCAATGTTAATGAAAGTCTCTTCTAACTTGCGAGACTTGGACAAGGGTAAGCAGGTTTTTGCCTTCTGTTTCAAGATGGGATTTGTTTATAATAGCATTGTATCCAGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGATTCTGTTCAGCTCTTTAAGGAACAAGATCAATGGGATTCAGCTCTATGCAATTCCATGATTTCAGGCTATGCTAGACATGATTTAGGGGAAGATGCTCTGCGACTTTTTGTGCTGACCTTGAGGAAGAATATCAGGCCAACAAAATACATGGTTAGCTCTCTCCTGAGTTCTGTTTCAATTTTTTTACCAGTTGAAGTGGGTAATCAAATCCATTCTTTGGTTCCTAAACTGGGTTTTGAGTCAGATGAAGTTATTGCCAATTCACTTGTTGACATGTATGCCAAATTTGGGTTTATTGACGATGCCTTGAATATCTTCAGTGAAATGAAAATAAAAGATTTGGTATCATGGAACACTATGCTGATGGGACTGACTTACAATGGGCGAGTGTCTTATACCATGGACCTCTTCAGGGAATTATTGACTAGAGAGGACATGCTTCCAGATCGAATAACACTTACTGCAGTTCTACAAGCATGCAACTATGGGTTATTTGTTGATGAAGGAATTGAAATATTTTCCTTAATGGAGATTAAATTTGGAGTAAAACCAGGAGAAGAACATTATGAATGTGTTGTGGCAATGTTGAGTAAAGCTGGTAAGCTCAAAGAAGCCATTGATATCATAGAAACAATGCCGTATAGAAGTACCTCTGGCATTTGGAAGTCAATTCTTTCTGCATGTGCAGTTTATGGAGACCTGCAAATTATAGAAGGAGTTGCAGAGAAAATAATCGATAGGGAAACACAAACATCCTTACCTTACTTGGTGTTGGCTCAAACATATCAAATGAGGGGTAGATGGGAGACCATGGTTCGAATGAGGAAGGCTGTGGAAACTAAAGGTACTAAAGAGGTCATCGGATGCAGTTGGATTGGAATAAAAAACAACTTATACACTTTTGAGTCAAATCAATTACAACATTATGGTGGCAAGGATCTTTATTTGCTGTTGAATTTACTGGACTGGGAGATGGAGACTGAAGGTTTTGTCTGA | 1893 | 0.401 | MYPFFKHTKGPHFPLSYCSLLLNHCLSQKSLNFVKVVHAHFIKLGLNTYTYLGNRCLNLYSEVGHVNDALKVFDDISHKNSTSWNIFLKGLLKSGQLGKAFHVFDVMPARDVVTWNSMISGYAYFGFLSHALELFVEMQGTGVRPSGFTFSIVMSLVSSPSHAKQIHCRMIRSEMDLDNVVLGNSLITMYGKLGLVEYAFGVIMTMKQFDVISWNSLIWACQRAGHHEQALELFYQMRDADFLPDQFTCSMLMKVSSNLRDLDKGKQVFAFCFKMGFVYNSIVSSAAIDLFSKCNRLEDSVQLFKEQDQWDSALCNSMISGYARHDLGEDALRLFVLTLRKNIRPTKYMVSSLLSSVSIFLPVEVGNQIHSLVPKLGFESDEVIANSLVDMYAKFGFIDDALNIFSEMKIKDLVSWNTMLMGLTYNGRVSYTMDLFRELLTREDMLPDRITLTAVLQACNYGLFVDEGIEIFSLMEIKFGVKPGEEHYECVVAMLSKAGKLKEAIDIIETMPYRSTSGIWKSILSACAVYGDLQIIEGVAEKIIDRETQTSLPYLVLAQTYQMRGRWETMVRMRKAVETKGTKEVIGCSWIGIKNNLYTFESNQLQHYGGKDLYLLLNLLDWEMETEGFV | 630 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g01327 | 630 | Gene3D | Tetratricopeptide repeat domain | 260 | 360 | IPR011990 | GO:0005515 | |
| Phco7g01327 | 630 | Gene3D | Tetratricopeptide repeat domain | 162 | 259 | IPR011990 | GO:0005515 | |
| Phco7g01327 | 630 | Gene3D | Tetratricopeptide repeat domain | 25 | 161 | IPR011990 | GO:0005515 | |
| Phco7g01327 | 630 | Gene3D | Tetratricopeptide repeat domain | 364 | 461 | IPR011990 | GO:0005515 | |
| Phco7g01327 | 630 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 311 | 345 | IPR002885 | - | |
| Phco7g01327 | 630 | Gene3D | Tetratricopeptide repeat domain | 462 | 598 | IPR011990 | GO:0005515 | |
| Phco7g01327 | 630 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 381 | 415 | IPR002885 | - | |
| Phco7g01327 | 630 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 111 | 145 | IPR002885 | - | |
| Phco7g01327 | 630 | NCBIfam | pentatricopeptide repeat | 83 | 112 | IPR002885 | - | |
| Phco7g01327 | 630 | NCBIfam | pentatricopeptide repeat | 212 | 245 | IPR002885 | - | |
| Phco7g01327 | 630 | NCBIfam | pentatricopeptide repeat | 113 | 146 | IPR002885 | - | |
| Phco7g01327 | 630 | NCBIfam | pentatricopeptide repeat | 315 | 346 | IPR002885 | - | |
| Phco7g01327 | 630 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 19 | 108 | IPR046960 | GO:0003723|GO:0009451 | |
| Phco7g01327 | 630 | Pfam | PPR repeat family | 110 | 155 | IPR002885 | - | |
| Phco7g01327 | 630 | Pfam | PPR repeat family | 210 | 254 | IPR002885 | - | |
| Phco7g01327 | 630 | Pfam | PPR repeat | 315 | 339 | IPR002885 | - | |
| Phco7g01327 | 630 | Pfam | PPR repeat | 385 | 411 | IPR002885 | - | |
| Phco7g01327 | 630 | Pfam | PPR repeat | 414 | 441 | IPR002885 | - | |
| Phco7g01327 | 630 | Pfam | PPR repeat | 488 | 512 | IPR002885 | - | |
| Phco7g01327 | 630 | FunFam | Pentatricopeptide repeat-containing protein At3g49710 | 23 | 161 | - | - | |
| Phco7g01327 | 630 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 80 | 110 | IPR002885 | - | |
| Phco7g01327 | 630 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 210 | 244 | IPR002885 | - | |
| Phco7g01327 | 630 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 383 | 609 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g01327 | Phco-Chr7 | 11946118 | 11948010 | Transposed |