Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01316 ATGGCTTCAGCACGAGACAATACAATAGTTGTGCTAGTTGCTTGCTTTGTAATGATCTCAGCAGCGTCACAAACAATTCGCCCTAGCTGCCAACATAAATGTGGAAGCGTTAACATTCCGTACCCATTTGGTACAACGGAGGACTGTTACTTGAAAAGCAACTTTTATGTTGCTTGTAACACAAGTCACAAGCCTCCCAAACTATTTCTGTGGAATGTGACAAAAAATATTGAGATCTTAGAGGTATCATTGAATGGTCATTTGCGGGTAAAATCCCCGGTAGCTTATCTCTGCTATGATGAAAAGGGTGTGCTAGTGGATTCAGGGAATTCATCTATGACTTTACAAGCATTCCCTTTCTCCTACACCCAAAACAAGTTCGTTGGAATTGGATGCGACACCCTTTCAACCATCAATGCAACAATTGGGAAAAACTACTCTGCTGGAGGGTGTTTTTCACTTTGTAGTAGTGTAGAAAGTTCAACCAATGGATCCCAGTTAGGCATTGGTTTCTGCCAAACCTCTATCCCAAAAAACATTTTGGAATATCAAGCTCGTGTCATGAGATCAAATATGCTGCATAGGGATATGAATATTCCTTGTAGCTACTCTCTTTTGGTGGAAGAAGACTCTTTCAAGTTTTCCACGGATGACTTCATCAAACTGCAGAAGAGAAGAACAGTTCCCACAGTGCTTGACTGGGCTGTTGGGAATCTAACATGTGAAGAAGCTAAGAATAATTTGACAAGTTATGTTTGCCAAGAAAATAGCGTATGCATTGATTCTCAAAATGGACGCGGGTACCTTTGCGGATGCTTAGAAGGTTATGTGGGAAATGCATACCTTCATGGTGGATGCCATGATATTGATGAGTGTGCCAACCCGAGTCTAAATGACTGTTCAGACATTTGCATTAACCTACCAGGGAGCTATAATTGTTCCTGTACCAACACCAGGAAGCAACTGGGAGATGGCAGAAAAGGAGGAAGTGGATGTGTCTCGAATCTACAACATGTGGTTAACGAGATTGTGATAGGTACGTATTACTTGTTTGGAACTGGCATAGGCCTTGTGCTGTTGTTAATTGGTAGTGGCTGGCTATACCACGTGTTTCGTAAAAGAAAACGGGTGAGGCTCACAGCAAGATATTTTAAGAAGACAGAAAGGCCACTGCTAGTTTATGAATTTGTGAACAATGGAACACTCTTTGACCACATTCACAATGAAAACACCACACTTCCCTGGGAAACACGTCTAAGAATAGCAGCAGAAACAGCTGATGTGCTTGCCTACTTGCATTCTTCTGCTTTCATACCAATCATCCATAGGGACTTCAAGTCAACTAACATACTCTTAGATGACAAATACACAGCTAAGGTTTCTGACTTTGGAACCTCTAGATTGGTTCCACGTGACAAGTGTCAGTTGACAACATTGGTTCAGGGAACTCTTGGGTACCTTGACCCTGAATACTTTCAGACCAGTAAACTAACTGAGAAAAGCGATGTGTATAGCTTTGGTGTTGTACTTGCTGAGTTGCTTACTGGAAGAAGGGCACTTTCTTTTGACATGCCAGAGGGGAGAGGAATTTGGCGTTGTATTTTCTTTCGGCTAGGTGAGGAAAGACCTAGCATGAAGGAAGTCGCTATGGAATTGGAAAGTCTCAAAACGATGACAACAACTTCATTGATTAATGCCACATCAAATGGAGCAGAATATGTTATAGGTGAAAGATCAGGTTCAGCAGAAAGAGACACTGCTAATTGTGATTATACTCATGCTATATGTGCTGGGCCTGAGAATGATACCATTTGCAACGATGTGATGTCACCGTTGTGGGGTGGTAGATGA 1851 0.4192 MASARDNTIVVLVACFVMISAASQTIRPSCQHKCGSVNIPYPFGTTEDCYLKSNFYVACNTSHKPPKLFLWNVTKNIEILEVSLNGHLRVKSPVAYLCYDEKGVLVDSGNSSMTLQAFPFSYTQNKFVGIGCDTLSTINATIGKNYSAGGCFSLCSSVESSTNGSQLGIGFCQTSIPKNILEYQARVMRSNMLHRDMNIPCSYSLLVEEDSFKFSTDDFIKLQKRRTVPTVLDWAVGNLTCEEAKNNLTSYVCQENSVCIDSQNGRGYLCGCLEGYVGNAYLHGGCHDIDECANPSLNDCSDICINLPGSYNCSCTNTRKQLGDGRKGGSGCVSNLQHVVNEIVIGTYYLFGTGIGLVLLLIGSGWLYHVFRKRKRVRLTARYFKKTERPLLVYEFVNNGTLFDHIHNENTTLPWETRLRIAAETADVLAYLHSSAFIPIIHRDFKSTNILLDDKYTAKVSDFGTSRLVPRDKCQLTTLVQGTLGYLDPEYFQTSKLTEKSDVYSFGVVLAELLTGRRALSFDMPEGRGIWRCIFFRLGEERPSMKEVAMELESLKTMTTTSLINATSNGAEYVIGERSGSAERDTANCDYTHAICAGPENDTICNDVMSPLWGGR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01316 616 SMART egfca_6 288 333 IPR001881 GO:0005509
Phco7g01316 616 Pfam Calcium-binding EGF domain 288 317 IPR001881 GO:0005509
Phco7g01316 616 Pfam Protein kinase domain 381 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01316 616 FunFam Wall-associated receptor kinase 2 239 290 - -
Phco7g01316 616 SUPERFAMILY EGF/Laminin 288 320 - -
Phco7g01316 616 SUPERFAMILY Protein kinase-like (PK-like) 377 558 IPR011009 -
Phco7g01316 616 Pfam Wall-associated receptor kinase galacturonan-binding 30 89 IPR025287 GO:0030247
Phco7g01316 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Phco7g01316 616 Gene3D Transferase(Phosphotransferase) domain 1 368 587 - -
Phco7g01316 616 ProSitePatterns Calcium-binding EGF-like domain signature. 288 313 IPR018097 GO:0005509
Phco7g01316 616 CDD EGF_CA 288 315 - -
Phco7g01316 616 ProSiteProfiles Protein kinase domain profile. 316 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01316 616 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 386 IPR045274 GO:0007166
Phco7g01316 616 Gene3D Laminin 240 290 - -
Phco7g01316 616 FunFam Wall-associated receptor kinase 2 397 536 - -
Phco7g01316 616 Gene3D Laminin 291 325 - -
Phco7g01316 616 SMART egf_5 291 333 IPR000742 -
Phco7g01316 616 SMART egf_5 240 287 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01316 Phco-Chr7 11876603 11879397 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Phco7g01316 Pkinase 1.7e-29 CL0016