Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01306 ATGAGAATTGTTTCACTGAAGAGGGACAATCATTTGAATAGTGAAGCCATGAATGGTGAGGTGGCAATTGCTCATGCAAATGGTGTTGCTGGAGAGGTTAGGGTCTTGAGAAGTGAACCCCTTAGTAATGGGGTGGCAGTTGGAGATAAAGGTGGCTCTGGTGGAGTGGGATGTTTGCGAACTTATAAGAGGCGTAAGAAGTCAAGTTCAAGAGGCAAAATTCAGGAACAATGCAGAACAGGCATGACAACTGCAAGTCGATTAGCAGATCAGAGTGTGAAGAAACCGTGTGATCTAGCTTTAGGCAATACTTCAGATGATTGTTCCCCAGGAAAGTGGGGAAATATTGTACTGCAGCATTTATATCAGTCATTAGGTGATGGCAATGGTGGTGTGGAGGGTTGCATTAGGGAAGCACTTAATCCAAAACATAATCATGCCACTACTGTTATGGACGCCTTTATAATTGAAAAGGATGGTCAAGAATGTTATTCACAATCTGAGCGGCTTTCTCATAGAACAGGGAAGGAAGCTAATGGACATGCAGATGTCATGTGTAATGGATGTTCCAGTGAATTACCTGATCATGGTGTCACTGAGATGTGTCAGCGTGTGCTCTGTAATATCTTAACCTCAGAAAAATTTTGTTCATTGTGTAAGGCTTTACTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTATTTGACTTTACCATCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAGCACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAACGAGATGGTTGCTCTTGCTAAAAGCCTATCCAGCATGTCAACAACTTCCTACTCTGAGCTGGTAGGAGTTTCAGCACCGAGCACATTTCAAGATGAGAAGCAGCCGTCCTGCAACCGAGAATTTGGCTCTCACATGAAACCAGAACAGACGCAAGAAGGTGCTATGTGCAAAATCGGAAGTTGCAGCCGTTGCGGAGAGAAGGCAGATGGCAAAGACTGTTTAGTTTGTGATTCATGTGAGGAGATATACCATGTGTCCTGTATTGAGCCGGCAGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGTCAAGTGTACTGCTAATGGGATTGGATCTCCACATGAGAATTGTGTACTATGTGAAAGGTTAAATGTTGAACAGACTCCAAATGACATAATTGGTGATGAAAGCTTTCCTACAATTAAGGAAACAAAAAATGAACTTAAAGAAAATTCAAAGTGCACCTCTGATGGGATTAAAGTTTCTGTAGGTGAGAAAACAACACCCATTTGCAAAGTTTGCAGAAATGAAGTGGATGGTAAAAAGATAAAAAAGATAAGAGTATGTGGCCATAGGTTTTGCTCCAACAAGTACTACCATGTAAGGTGTTTAACAAAGAAGCAGTCAAAGTCATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCTCTGTTTGCTTAATTGATCGAGATGATGATCAGATTGTTATCTGTGATGGCTGTGATCGTGGATATCACATCTATTGCTTGACACCTCCACAGGCTTCTATTCCAAGCGGGAAATGGTTCTGCAGACTCTGTGATGCTGGGATACAAGCAATTCACAAGGCTAAAAAGGCATATGAATGTAACGAGCCAAGCAGAAAAGGGGAACATGCTGCTGCTAAGCCAAATGCTAAACGTGAAAAGAAACACAGAAATAAACGAGCAAGAGATTTGGAAAGAGGTGGTGCAATGGACATGCTTTTAACCGCAGCCAATTCTCTGAATTTTGAGGAGAAAGGCTGCAATCCAAATTGA 1839 0.4171 MRIVSLKRDNHLNSEAMNGEVAIAHANGVAGEVRVLRSEPLSNGVAVGDKGGSGGVGCLRTYKRRKKSSSRGKIQEQCRTGMTTASRLADQSVKKPCDLALGNTSDDCSPGKWGNIVLQHLYQSLGDGNGGVEGCIREALNPKHNHATTVMDAFIIEKDGQECYSQSERLSHRTGKEANGHADVMCNGCSSELPDHGVTEMCQRVLCNILTSEKFCSLCKALLENFQGMKPESVFDFTIMNSRMKEQAYEQSPALFLSDIQQVWRKLQDTGNEMVALAKSLSSMSTTSYSELVGVSAPSTFQDEKQPSCNREFGSHMKPEQTQEGAMCKIGSCSRCGEKADGKDCLVCDSCEEIYHVSCIEPAVKEIIPHKSWYCVKCTANGIGSPHENCVLCERLNVEQTPNDIIGDESFPTIKETKNELKENSKCTSDGIKVSVGEKTTPICKVCRNEVDGKKIKKIRVCGHRFCSNKYYHVRCLTKKQSKSYGHCWYCPSCLCSVCLIDRDDDQIVICDGCDRGYHIYCLTPPQASIPSGKWFCRLCDAGIQAIHKAKKAYECNEPSRKGEHAAAKPNAKREKKHRNKRARDLERGGAMDMLLTAANSLNFEEKGCNPN 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01306 612 MobiDBLite consensus disorder prediction 561 590 - -
Phco7g01306 612 SUPERFAMILY FYVE/PHD zinc finger 328 381 IPR011011 -
Phco7g01306 612 PANTHER OS02G0192300 PROTEIN 269 406 - -
Phco7g01306 612 Gene3D - 229 382 - -
Phco7g01306 612 ProSiteProfiles Zinc finger PHD-type profile. 330 381 IPR019787 -
Phco7g01306 612 FunFam PHD finger protein EHD3 isoform A 220 382 - -
Phco7g01306 612 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 549 IPR013083 -
Phco7g01306 612 ProSitePatterns Zinc finger PHD-type signature. 333 378 IPR019786 -
Phco7g01306 612 SUPERFAMILY FYVE/PHD zinc finger 495 543 IPR011011 -
Phco7g01306 612 SMART PHD_3 496 541 IPR001965 -
Phco7g01306 612 SMART PHD_3 332 379 IPR001965 -
Phco7g01306 612 SMART PHD_3 443 495 IPR001965 -
Phco7g01306 612 ProSiteProfiles Zinc finger PHD-type profile. 493 543 IPR019787 -
Phco7g01306 612 ProSiteProfiles Zinc finger RING-type profile. 444 494 IPR001841 -
Phco7g01306 612 Pfam PHD-finger 496 541 IPR019787 -
Phco7g01306 612 Pfam PHD-finger 333 380 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01306 Phco-Chr7 11720328 11726900 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco7g01306 PHD 1.2e-12 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01306 7 11720328 11726900 Phco7g01306 7 11720328 11726900 ECH
Phco2g00766 2 8354056 8359463 Phco7g01306 7 11720328 11726900 PCT