Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01301 ATGCCGGAAATGGGTCCCCCCGGAGAACCCTCCCGCGGAGGCTCAGGTGGCCGCACGGTGCTGGTGGGAGTGAAGATGGACTCCCCCAGCAAGGAATTGCTCACGTGGGCTTTGGTCAAAGTTGCTCACCCTGGTGACACCGTGGTTGCTCTGCATGTTCTTGGGAACCAGGAAACTGTGAACAGAGACGGGAAATCTTCGCTGCTTTCGCTTGTCAAGGCGTTTGACTCTGTTCTTGCCGTTTATGAAGGATTCTGCAACTTGAAACAGGTCGACCTCAGACTCAAAATTTGCCGTGGTTCATCGGTGAAGAAAATTTTGGTTCGAGAAGCAAATGGTTCTTCCGCAACTCATGTTGTGGTCGCAACAACTCATGGTCTGCATAGAATCCGGTCATCTACCTTTGTAGCTAAATACTGTGCTAAAAAGTTATCCAAGGACTGTTGTGTTCTCGCTGTTAACAATGGAAAAGTGGTGTTCAAGCGTGACAGCTCGCCACCAAGTGTTGCTGACTTACAAGGGATTGATCGTCAACACAGAAATGGTTTGTTCGGTTCGATTCATTGGACACTCAGCAAGAATACAAAAGTTCTAAGTGATGACAATTCAGGGACGGATGCTGATGAGAAGAAACCTGTTCAAATTTCAGATCACAGTTTAGCGAAGTTTTTTCTGGATTCTACAGAAACTGTTACAAAACCAAGCTGTTCAATTTGTGGCCCAACCCTGGCATGGCCAGACCCTACTTGCTACCAGTCTGAAGAAAGGTTTTCTGGTGATGATGGTAAAGAGAATTCCTTGGCTATAGTACCTGTGCAAGTGCAACCCACTGTTTCAGCAAAAACGGAATCGAAACCTGGTTGGCCACTACTACACCGCGGAATTTTATCGGACACACAATCTACTGATAGATCATTGATGCACCCCCAGATCTCCGTGGTCCAGTGGGCAATGAGGTTACCTTCTAGAAATATTTCATATGCTGCAGATCGTGATGAAAAGCCTGAAAGTTGTGATCAAGGTCTAGATCAACCTGCGGCTTTAGATAGGGAAAGTGGTGCGCTTGTTCCAGTAGATTCTGAAATAGGGACAGCTACTTCGCCAGAAGGCAATTCAAGAAACATTCCTAAAGAATTGGAGGGCCTTCATGAGAAGTACTCCTCGACTTGTAGATTGTTTGGGTACCAAGATCTTGTATCTGCCACATCAAATTTCTTACCGGAAAACTTTATTGGGAAAGGAGGAAGCAGTCAGGTTTACAGAGGCTGTCTTCGTGATGGCAAGGAACTTGCTGTCAAGATTCTAAAGCCTTCTGAAGATGTATTGAAGGAGTTTATTCTAGAAATAGAAATCATCACTACCTTGCATCACAAAAACATAATTTCCCTCCTGGGATTCTGCTTTGAGAATGGCAAATTCCTTCTGGTTTATGATCTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAAGAAAACTTCAATTGCGTTTGGTTGGTCGGAGAGATATAAGGTAGCAGTGGGTATTGCTGAGGCTTTAGATTATCTGCATTCTAAAGATGATCAACCCGTGATCCATCGGGATGTAAAGTCATCAAATGTGTTATTATCCGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTGGCAAAATGGGCATCAACCTCGTCATCGCATATAACCTGCACAGATGTTGCTGGAACCTTCGGTTACTTGGCTCCTGAATACTTCATGTACGGCAAAGTAAATGATAAGATTGATGTTTATGCATTTGGTGTGGTGCTCCTTGAACTTCTTTCGGGGAGAAGGCCCATAAACCGTGATTATCCTAAAGGCCAAGAGAGTCTTGTCATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAAGATGGTCTTGGCAGCCACACTGTGTATCAAACGTGCTCCAAGGGCTAGGCCTCAAATGAACCTTATCTTAAAGCTCCTTCAAGGTGACACTGAAACAATGAAGTGGGCAAGGTTAGAAGTTAATAACGCTTTGGATGCAGCAGAAACGGTTGATGATGAATCCTGTCCACCGAGTAATAATCTACAGTCACATATAAATGTTGCACTGGGTGATGTGGTGGATGATTCGGTCTCCATGTGCAGTGTTGAGCAAGGTTTGACATTGGAGCAATACTTGAGAGGCCGTTGCAGCCGTGCATCAAGCTTTGACTGA 2262 0.4456 MPEMGPPGEPSRGGSGGRTVLVGVKMDSPSKELLTWALVKVAHPGDTVVALHVLGNQETVNRDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLRLKICRGSSVKKILVREANGSSATHVVVATTHGLHRIRSSTFVAKYCAKKLSKDCCVLAVNNGKVVFKRDSSPPSVADLQGIDRQHRNGLFGSIHWTLSKNTKVLSDDNSGTDADEKKPVQISDHSLAKFFLDSTETVTKPSCSICGPTLAWPDPTCYQSEERFSGDDGKENSLAIVPVQVQPTVSAKTESKPGWPLLHRGILSDTQSTDRSLMHPQISVVQWAMRLPSRNISYAADRDEKPESCDQGLDQPAALDRESGALVPVDSEIGTATSPEGNSRNIPKELEGLHEKYSSTCRLFGYQDLVSATSNFLPENFIGKGGSSQVYRGCLRDGKELAVKILKPSEDVLKEFILEIEIITTLHHKNIISLLGFCFENGKFLLVYDLLSRGSLEENLHGNKKTSIAFGWSERYKVAVGIAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRRPINRDYPKGQESLVMWASPILNSGKVLQLLDPSLGDNYDHEEMEKMVLAATLCIKRAPRARPQMNLILKLLQGDTETMKWARLEVNNALDAAETVDDESCPPSNNLQSHINVALGDVVDDSVSMCSVEQGLTLEQYLRGRCSRASSFD 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01301 753 SUPERFAMILY Protein kinase-like (PK-like) 386 676 IPR011009 -
Phco7g01301 753 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 374 479 - -
Phco7g01301 753 CDD USP_Like 19 153 - -
Phco7g01301 753 Gene3D Transferase(Phosphotransferase) domain 1 480 700 - -
Phco7g01301 753 ProSiteProfiles Protein kinase domain profile. 405 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01301 753 Pfam Protein kinase domain 409 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01301 753 Gene3D HUPs 17 155 IPR014729 -
Phco7g01301 753 Pfam Universal stress protein family 18 150 IPR006016 -
Phco7g01301 753 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 152 - -
Phco7g01301 753 FunFam Putative receptor-like serine/threonine-protein kinase 480 692 - -
Phco7g01301 753 Gene3D Phosphorylase Kinase; domain 1 371 479 - -
Phco7g01301 753 PANTHER OS08G0249100 PROTEIN 74 686 IPR046958 -
Phco7g01301 753 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Phco7g01301 753 MobiDBLite consensus disorder prediction 329 354 - -
Phco7g01301 753 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 154 - -
Phco7g01301 753 CDD STKc_IRAK 411 678 - -
Phco7g01301 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Phco7g01301 753 SMART serkin_6 405 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01301 Phco-Chr7 11675178 11678496 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Phco7g01301 Pkinase 1.9e-43 CL0016