Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01298 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACATATTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGGTGCCTCTGGAAAGATGCACGAATACATCAGCCCCTCCACCACGTTGATTGACGTCCTAGACAGATACCAAAGAGCCTCTGGGAAGACCCTGTGGGACGCCAAGCATGAGAATCTCAGCAATGAAATAGATAGACTTAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAGGACATTACGTCACTGAATTACAAGGAATTGATGGCTCTAGAGGATGCCCTTGAAAATGGCCTCAATGGCGTCCGTGAGAAAAAGGTGGAAGTGCACAGGATGTTCAAGAGAAATGGCAAAATTTTGGAGGAGCAAAATAAGGAACTCAATTTCCTTCTGCAACAACATTTGGCACTAGAAGGTGTGGGAAACATGCATGGACAATGGATTTGA 546 0.4377 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGVREKKVEVHRMFKRNGKILEEQNKELNFLLQQHLALEGVGNMHGQWI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01298 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco7g01298 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco7g01298 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Phco7g01298 181 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco7g01298 181 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Phco7g01298 181 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Phco7g01298 181 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco7g01298 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco7g01298 181 Coils Coil 77 111 - -
Phco7g01298 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco7g01298 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco7g01298 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco7g01298 181 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Phco7g01298 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01298 Phco-Chr7 11638644 11641746 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco7g01298 K-box 3.6e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01298 7 11638644 11641746 Phco7g01298 7 11638644 11641746 ECH
Phco2g00782 2 8654916 8657861 Phco7g01298 7 11638644 11641746 PCT