Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01269 ATGGACAATAAGGTGGAGACGCTTGGGAGATTAGCCCGGTGGAAAATTGACAACCTCGAACCTTCTTTCTACAAAAAATCTGACCCTTTCAAGGTCGGAATCTGGAACTGGTGCTTTTCAGTTGTGAGGAATAGGTTCCTCTACATACATATTTTTCCGGAACCTTCTCCTGTTTCTAAGAATCAACCACCTTTTGCTCGATTCATTCTTCGAGTCTCCAATGCTGGCTCATCTCGCAGCTTTCATATTTCCCCTGTTCAAGAAAAGCTGCTCAAGACAGAGGATGACTTTATCTGGACTGTGAATACTACTTTTGTTGGTCGCTACATCATTGACGTTGAGTTTCTAGACCTGAAGATAAATGGTGAAGAAACTAGCTCTGTATGGCCATCTGGAAATGTGCAAACCATTGAATCCCGAAGTAGCACTATTTGTTGCCTCTCTCGCATGCTTGGTGAAGCTATACATGCTGACCTAACCATCATCACTGCTGATGGCTCATTGAGAGCTCATAAGGCAGTTCTCTCATCAAGTTCTCCAGTGTTTAGGAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCTTCTACAATCCATGTTGAAGACATGTCACTTGAATCCTGCACGGCTCTTATAAGTTTCTTGTATGGAACAATCAAGCAACAAGATTTCTGGAAACACCGGCTTCAATTGCTTGGAGCTGCTAATAAATATGACATTGATGGTCTCAAAGACATCTGTGAGGAAAGCCTTCTGGAAGATCTTAACTCAAGAAATGTTCTTGATATGCTAAATGAGGCTTGGTTTTATGAATTGCTCAAGTTAAAGAAAGGATGTTTGGTGTTCTTATTTGAATTTGGTAAGATACATGATGTGAAGGATAAACTGAATAATTTTTTCCAACATGCAGATAGGGAGCTAGTGATTGAGATGTTTCAGGAGGTGCTTTCAGTTTCGAACCCTGTATAA 969 0.4076 MDNKVETLGRLARWKIDNLEPSFYKKSDPFKVGIWNWCFSVVRNRFLYIHIFPEPSPVSKNQPPFARFILRVSNAGSSRSFHISPVQEKLLKTEDDFIWTVNTTFVGRYIIDVEFLDLKINGEETSSVWPSGNVQTIESRSSTICCLSRMLGEAIHADLTIITADGSLRAHKAVLSSSSPVFRSMFHHNLKEKESSTIHVEDMSLESCTALISFLYGTIKQQDFWKHRLQLLGAANKYDIDGLKDICEESLLEDLNSRNVLDMLNEAWFYELLKLKKGCLVFLFEFGKIHDVKDKLNNFFQHADRELVIEMFQEVLSVSNPV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01269 322 Pfam BTB/POZ domain 155 253 IPR000210 GO:0005515
Phco7g01269 322 ProSiteProfiles BTB domain profile. 157 216 IPR000210 GO:0005515
Phco7g01269 322 SMART BTB_4 157 255 IPR000210 GO:0005515
Phco7g01269 322 Gene3D Potassium Channel Kv1.1; Chain A 133 284 IPR011333 -
Phco7g01269 322 SUPERFAMILY POZ domain 142 253 IPR011333 -
Phco7g01269 322 PANTHER OS08G0495500 PROTEIN-RELATED 1 321 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01269 Phco-Chr7 11353787 11356535 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco7g01269 BTB 4.2e-22 CL0033