Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01216 ATGGCCGACAGTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCAGAAGGGTTACGGATTCATAAGTCCCCAAGACGGCTCCGACGATCTCTTCGTTCACTTCACTTCCATCCGATCTGACGGCTACCGTTCCTTGTCCGACGGCCAGTCTGTCGAGTTCCTCCTCGATTACGGCGACGACGGCCGCGCCATGGCCGTCGACGTCACCTCTCCCGTTAGATCTAGCCGTCCAGCTGGCATTCGAGGCCGGGGTGGGGGTGGAAGAGGACGCTACGGCGGAGGGGAAGGCCGTGGGGGAGGGATCAGCCGTAGAGGAGGTTACGGCCGTGGTGGAGGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCGAGGGATTGTTACCAGAGACAGGGTGGTGGTGGTGGTGATGGTGATGGTAGGATACAGAGACGCGGTGGAGGCGGAGGTGGTGGAGGGTGTTATAACTGTGGAGAGGAAGGGCATTTTGCGAGGGAATGTCCAAACGTTGGGAAATTAAATGAGTGA 540 0.5796 MADSRRSTGTVKWFNAQKGYGFISPQDGSDDLFVHFTSIRSDGYRSLSDGQSVEFLLDYGDDGRAMAVDVTSPVRSSRPAGIRGRGGGGRGRYGGGEGRGGGISRRGGYGRGGGGPECYNCGRIGHLARDCYQRQGGGGGDGDGRIQRRGGGGGGGGCYNCGEEGHFARECPNVGKLNE 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01216 179 SUPERFAMILY Retrovirus zinc finger-like domains 106 174 IPR036875 GO:0003676|GO:0008270
Phco7g01216 179 MobiDBLite consensus disorder prediction 70 109 - -
Phco7g01216 179 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Phco7g01216 179 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Phco7g01216 179 SMART csp_8 8 73 IPR011129 GO:0003676
Phco7g01216 179 ProSiteProfiles Zinc finger CCHC-type profile. 158 173 IPR001878 GO:0003676|GO:0008270
Phco7g01216 179 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Phco7g01216 179 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Phco7g01216 179 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Phco7g01216 179 Pfam Zinc knuckle 117 131 IPR001878 GO:0003676|GO:0008270
Phco7g01216 179 Pfam Zinc knuckle 157 173 IPR001878 GO:0003676|GO:0008270
Phco7g01216 179 Gene3D - 147 177 - -
Phco7g01216 179 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 174 - -
Phco7g01216 179 SMART c2hcfinal6 117 133 IPR001878 GO:0003676|GO:0008270
Phco7g01216 179 SMART c2hcfinal6 157 173 IPR001878 GO:0003676|GO:0008270
Phco7g01216 179 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Phco7g01216 179 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Phco7g01216 179 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Phco7g01216 179 Gene3D - 1 71 IPR012340 -
Phco7g01216 179 Gene3D - 91 144 - -
Phco7g01216 179 ProSiteProfiles Zinc finger CCHC-type profile. 118 131 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01216 Phco-Chr7 10629479 10630018 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Phco7g01216 CSD 3.1e-24 CL0021