LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g01197	ATGCATCACCTATCTCGGATTTTTGAGCACCGCAACCGCACCAAGGCCATGGATCGCAAGAACCCGCGGAGGAAGCCCAAGCTCGAGCGCCGCAACGCCCTCAGGTACTCCGAATACGACGCTGGATCGTCTACCTCCGACCAAACACTCTACACGCGCTCCATGGAGTTCTACGACCGCACCAGCTTCCGAATCGAGGGAGTCGAGGGCGAGTTCGATCGAATTTGCAGGAGTTTGGGCCTCTCCGGCCCGGAAGACTTCGCTATTCCCGCTGCGGCATGGGAAGCCATGAAGTTTCGTTCCTCTTCGGATATTCTCCCGATACTGAAGCTCGAAAACCTCGATATTCTCGAGGAAGAGGAAGAAGAAGTACCGAAGGTAAACGAGGAGAGAATAGTAAAACCACCAGAGGATGGTGAATTGAGTGAAAAATTCGAAGATGGGGTTAGGGTTTTGGAGGTAGATGAGTCGAGCACTGGTATTAAGGGGGTTCGTCCGCCGATGCTGAATCCGCCGCCGGGGATGAGGGTTAAGATGGTGGATGATGGCTCGTGTTCCACGTGGGACCTTTTGAGGGATTTGGCTCCGATGGGTGAAGAGTTACCGTTGAAGCACTCTGAGCGTGTGAGGGAAGTAGAGAATGTTGCTCGGCTAGGGAAAGTAGAGAGGGAGGTAGCGGAGAAGGAAGAAGGGGAAGTGGGTAGAGCGAGCCCGAAGAGGGAAGAGGAAGAGAATGCAGATAATGCAGCAAGGATTGCGGAGATCGTGGCTGGGCTTTCGGAATCGTGTTCGTTTTCCACTTCGAACGAAGATGATTCTTCTAGTAGTACCACGGATCATACCTCCAACAATATTTCTCCGCAAGGAAGAATCAAGCGAATTATTACCGCCGGAAGCTGGCAGAAGGGTGATTTTCTTGGGGGTGGCTCGTTTGGCACCGTTTATGAAGGAATTTCTTATGACGGCTTCTTTTTTGCTGTAAAAGAAGTTTCATTGCTTGATCAGGGGACTCAGGGGAAGCAAAGTGTATATCAATTGGAGCAGGAAATAGCACTTTTGAGTCAATTTGAGCATGACAATATTGTTCAATACTATGGCACAGAAATGGATCAATCAAAGCTGTATATCTTTCTTGAGCTTGTAACCAAAGGTTCCCTTAGAAGCCTCTATCAAAAGTATACTCTTCGAGATTCTCAAGTATCTGCCTATACAAGACAGATTCTGCATGGTATGAAGTATCTTCATGATCGAAATGTGGTTCACAGGGATATCAAATGTGCAAATATATTGGTGGATGCAAGTGGATCTGTCAAGCTTGCAGATTTTGGATTGGCCAAGGCAACCAAATTGAATGACGTTAAATCAATGAAGGGTACAGCATTCTGGATGGCCCCTGAGGTTGTGAAAGGAAAGAACAACGGTTATGGGCTTCCAGCTGATATGTGGAGTCTGGGATGCACTGTACTGGAGATGTTAACAGGCCAACTTCCGTACTGTGATTTGGAATGGATGCAGGCATTATTTAAAATTGGAAAAGGTATTCCACCATCTATTCCTGACTCCCTTTCGAGAGATGCAACCGATTTTATCCTGCAGTGCCTTCAAGTTAATCCAAATGATCGTCCCACCGCTGCTCAACTTTTAAACCATTCATTTGTCCAAAGGCCACTTTCCCAGACCTCAGGTTCTTCTTTTCCTCATATTCTTGGCCGGAAGGGTTAA	1722	0.4762	MHHLSRIFEHRNRTKAMDRKNPRRKPKLERRNALRYSEYDAGSSTSDQTLYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFAIPAAAWEAMKFRSSSDILPILKLENLDILEEEEEEVPKVNEERIVKPPEDGELSEKFEDGVRVLEVDESSTGIKGVRPPMLNPPPGMRVKMVDDGSCSTWDLLRDLAPMGEELPLKHSERVREVENVARLGKVEREVAEKEEGEVGRASPKREEEENADNAARIAEIVAGLSESCSFSTSNEDDSSSSTTDHTSNNISPQGRIKRIITAGSWQKGDFLGGGSFGTVYEGISYDGFFFAVKEVSLLDQGTQGKQSVYQLEQEIALLSQFEHDNIVQYYGTEMDQSKLYIFLELVTKGSLRSLYQKYTLRDSQVSAYTRQILHGMKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKLNDVKSMKGTAFWMAPEVVKGKNNGYGLPADMWSLGCTVLEMLTGQLPYCDLEWMQALFKIGKGIPPSIPDSLSRDATDFILQCLQVNPNDRPTAAQLLNHSFVQRPLSQTSGSSFPHILGRKG	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g01197	573	SMART	serkin_6	300	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco7g01197	573	Pfam	Protein kinase domain	301	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco7g01197	573	MobiDBLite	consensus disorder prediction	225	247	-	-
	Phco7g01197	573	ProSitePatterns	Protein kinases ATP-binding region signature.	306	328	IPR017441	GO:0005524
	Phco7g01197	573	MobiDBLite	consensus disorder prediction	263	288	-	-
	Phco7g01197	573	FunFam	Mitogen-activated protein kinase 1, putative, expressed	298	565	-	-
	Phco7g01197	573	MobiDBLite	consensus disorder prediction	10	31	-	-
	Phco7g01197	573	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	419	431	IPR008271	GO:0004672\|GO:0006468
	Phco7g01197	573	ProSiteProfiles	Protein kinase domain profile.	300	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco7g01197	573	SUPERFAMILY	Protein kinase-like (PK-like)	297	556	IPR011009	-
	Phco7g01197	573	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	144	561	-	-
	Phco7g01197	573	Gene3D	Transferase(Phosphotransferase) domain 1	298	567	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g01197	Phco-Chr7	10412483	10419049	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Phco7g01197		Pkinase	7.5e-68	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g01197	7	10412483	10419049	Phco7g01197	7	10412483	10419049	ECH