Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01196 ATGCTCTGCTTCCTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGACCGATGTCACCCGTTGAAGGACATGGCGGAGGGAGGGGATGCCGCCGCCGTGGGGAGGCCCTATCGGTCTGACTTTGTGACGGAAATTACTCGTGATTCTGCTGTACGTACAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTCGCTGAGCGTTCCCCATTTGATGTTGCCGAAGAAACTTCGACTTCTGCTGTGCTTACTCTGCCCAGTGGGTTGGCTGGCCTGCTGAACCGACAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCTGGTGGACATAAGAGGAAATCTTCGGCTAGGGCTAACCAGAAGAAGCCTGATGATTCTAACATTTGGATTGAGACTGAGGAGTACTTTAGGGACTTAACTTTGGCTGATATTGATACCTTGTTTGAGTTCTCTCGTGCAACTAGTTTAGCTTCTCAGGAATTGGGAAATGCTCCAAGTTACAATGCAGTTACTAGTTATATCAGGAATGAAATGGAACCTGTTCCAAGATTCAATGCAGGAGTCAGCAGTGAGGATGAAAAGAAGGGTGACTTAGTGGGTAGTGAGGATGCAAAGAAGGTTGGTGAAGCTGTGGAAAATGAGGATGAATTGTTGGTAATTGAGGCAATTGACGAAGCTGCTGTTGAACAAGCTTGTCCTCAGGATGACAAGAATCAAGATATTTCTGATTCTGCTATTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAACTCTCTTTGACTTCTGAGCGCCCCTCTAAGAAAAGGAGGCTTTTGGGTGTTGAAGCTGGTTTGGAGAAAGTTATAATGACTTGTCCTTGTGATGAGGGTCAACTGTTTTGCCATTACTGTGGAAGGGGAGACATTGGCAGGGACTCCAATAGGTTAATTGTCTGCACTTCTTGTAAAATGGCAGTTCACCGTAAGTGCTATGGTGTGGTTGATGATGTAGATGAGACTTGGCTGTGCTCCTGGTGCAAGCAAATGGGTGATGTTGATGAATCAGTGAATCCTTGTGTTCTTTGTCCAAAGAAGGGTGGTGCATTAAAACCAGTTAATAGCAGTGTGGAAGGTGCTGGTTCTGCCCCATTTGTGCACTTATTTTGCTCTCTGTGGATGCCTGAGGTTTATGTAGATGATTTGATGAAGATGGAACCTGTTATGAATGTGGGGGAAATCAAGGAAACCCGGAAGAAATTAGTTTGTAGTGTTTGCAAAGCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAAGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTTAAACACTCAGATCTACCCGAGAGTAGAAGCATCTTGCCACAGGAAGGCTTTATTGAGGTTAGAAATGAATTTTCTGAAGCCAATGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGCGAGATTGCAGGAATGGAGGATTAGTCTCTGACAGTAATCCAGACAAATTGAACCATAATGACGAACCACCGGATGGAGGATTACCTGATTGCAGGTTAAGTGCTCACATGTTGGGATGTGGTGCTCTGCCCCAACAAAATGTTGAAGTGGTAGGGAGAGGGAATGAGAATGTTGATGCATCTGATTCTCTTAGCTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTAACGTAAAAGACGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAGGCCATGTATATACCAGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGATAGTGGAGCCCCAGATGGCTCTGATATTTTACCAATATCAGACTCGGGTTTGCTGGATCCTGTTGCTGTTAAGTCAGTTCCACCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGTGATATGTCCATCTGAGGGGGTTACAAGTGAGAATGGGATGCCAGTGCATGTGTGTAGAGTTGGTCAGTCCAACTGTGAGAATCCAACAAGTTCTAATGAAGCATCCATCCCCGATGTAACTGAAATGAACTTACCCAAGTCTGAGGATATTTTTCATGAAGTTCAAGGGAATGATGATAAACCTCACAAATCCTGCTTATCTGGAAAGGGTGCAGTCTCTAGTTACATTCATCCATTCATCAACAAGAAATTGCCGCAGCTTGGGGTGCCATTGGAGGATGTTATATGTTCAAGTGACAAGAAAAATTCGGGTTTGGTTGAATCCTTTGGGGCTAGTGGCTGCTCAAATAGCCAAAATCAGAATTTAACTTGCAGTGAAATATCAAAGCCTGATGCAGTAAAGAAAGAGCAATTGGTTAGAAGTAAAGAAATGGAACTCTCGGAATTTTCTCCTCAAGATGAATTGGAAGGGGAACTTGTTTATTTTCAGTATAGGTTATTGCAGAATGTGGTTGCAAAAAGGAGGCATATTGATAATTTAATCTACAGTGTTGCCAAGAGTTTACCTCATGAGATTGATAGGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGAAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTACTGGCTGCTGCAACTGCTGCTGCGGCAGCATCTTCTAGGTCATTCCGGAAAGACACCTTAGATGAATCTATGCAACAGGAGAATTTATTAAAATCGGACAATTTAAACGGAAGGACGGGTGCTTGTTCTCAACCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACTAGAACTTCATCAGAGAAATATTCAGATTTTTGCATGCCAACCTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGGTCAGAGACTATTTTAAACCCTGTCCTAGTCTGCTCTGGTTGCAAGGTTTCAGTTCACTTAGATTGCTATCGTAGTGTGAAAGAAACAACAGGTCCGTGGTACTGTGAGTTATGTGAAGAAATGTCATCTAGAAGCTCTGGGGCATCTGCTATCAACTTTTGGGAGAAACCTTATATTGGCGTAGAATGTGCTCTCTGTGGCGGTACTACTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGATTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTATGTTCAGAAGAGGACAAATAGATGCTGTTGAAGGAATGGAAAGTGTGCGAAAAGGAGTTGACATTTGTTGCATCTGCCATTGCAAAAATGGTGTATGCATGAAGTGTTGCTATGGGCATTGTCAGACCACATTCCATCCATCATGTGCTAGAAGTGCTGGTTTGTACATGAATGCGAGGACTGCTGGTGGCAAGGTTCAACACAAAGCTTACTGTGAAAAGCATAGTTTGGAGCAAAAAGCAAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTGCGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTGGTACTATGTTCACATGACATACTGGCCTTTAAAAGAGATAATGTTGCGAGGTCTGTGCTAGTTCATAGCCCTTTCATCCTTCCTGATGGTAGTTCAGAATCAGCTACAACGTCCCTAAAAGGGAACACAGATGGATATAGATCATGCAGTGAACCACTCCAAAGATCAGATGATGTTACTGTTGACAGTTCTGTTTCTGCTAAGCACCGTGTCAGAGTCGCCATATCTATGGATGCAGACCCAAAATTGGATGATGACTGCTCAACCTCCCAAAGCAAATATAACCACAAGATTCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCATCACGAAATATTTTGGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCGATGCTACCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGAACTCTAACGAGGATATATATGCTAGTGGGCCTGTGGACAGGTAG 4248 0.4268 MLCFLCTLLLPAMTGDRCHPLKDMAEGGDAAAVGRPYRSDFVTEITRDSAVRTIDYLSQARKALAERSPFDVAEETSTSAVLTLPSGLAGLLNRQTDNRRRPKKSHSGGHKRKSSARANQKKPDDSNIWIETEEYFRDLTLADIDTLFEFSRATSLASQELGNAPSYNAVTSYIRNEMEPVPRFNAGVSSEDEKKGDLVGSEDAKKVGEAVENEDELLVIEAIDEAAVEQACPQDDKNQDISDSAISLEWFLGCRNKLSLTSERPSKKRRLLGVEAGLEKVIMTCPCDEGQLFCHYCGRGDIGRDSNRLIVCTSCKMAVHRKCYGVVDDVDETWLCSWCKQMGDVDESVNPCVLCPKKGGALKPVNSSVEGAGSAPFVHLFCSLWMPEVYVDDLMKMEPVMNVGEIKETRKKLVCSVCKAKCGACVRCSHGSCRTSFHPLCAREARHRMEVWAKYGNDNVELRAFCFKHSDLPESRSILPQEGFIEVRNEFSEANDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHNDEPPDGGLPDCRLSAHMLGCGALPQQNVEVVGRGNENVDASDSLSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKGHVYTSAFQKGLKVKFKPANASKIDSGAPDGSDILPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVICPSEGVTSENGMPVHVCRVGQSNCENPTSSNEASIPDVTEMNLPKSEDIFHEVQGNDDKPHKSCLSGKGAVSSYIHPFINKKLPQLGVPLEDVICSSDKKNSGLVESFGASGCSNSQNQNLTCSEISKPDAVKKEQLVRSKEMELSEFSPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDRAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENLLKSDNLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPTSDFSKEQCKSCDICRRSETILNPVLVCSGCKVSVHLDCYRSVKETTGPWYCELCEEMSSRSSGASAINFWEKPYIGVECALCGGTTGAFRKSSDGQWIHAFCAEWVFESMFRRGQIDAVEGMESVRKGVDICCICHCKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTDGYRSCSEPLQRSDDVTVDSSVSAKHRVRVAISMDADPKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAASRNILDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKNSNEDIYASGPVDR 1415
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01196 1415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1074 1185 IPR013083 -
Phco7g01196 1415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 472 IPR013083 -
Phco7g01196 1415 MobiDBLite consensus disorder prediction 954 975 - -
Phco7g01196 1415 CDD ePHD 1078 1183 - -
Phco7g01196 1415 ProSiteProfiles Extended PHD (ePHD) domain profile. 349 470 IPR034732 -
Phco7g01196 1415 Pfam PHD-finger 307 340 - -
Phco7g01196 1415 Pfam PHD-finger 1021 1054 - -
Phco7g01196 1415 MobiDBLite consensus disorder prediction 1396 1415 - -
Phco7g01196 1415 MobiDBLite consensus disorder prediction 92 124 - -
Phco7g01196 1415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 344 IPR013083 -
Phco7g01196 1415 ProSiteProfiles Extended PHD (ePHD) domain profile. 1075 1184 IPR034732 -
Phco7g01196 1415 SUPERFAMILY FYVE/PHD zinc finger 1001 1055 IPR011011 -
Phco7g01196 1415 ProSiteProfiles Zinc finger PHD-type profile. 1007 1056 IPR019787 -
Phco7g01196 1415 ProSiteProfiles Zinc finger PHD-type profile. 291 342 IPR019787 -
Phco7g01196 1415 PANTHER PHD FINGER PROTEINS 103 940 - -
Phco7g01196 1415 MobiDBLite consensus disorder prediction 512 537 - -
Phco7g01196 1415 Coils Coil 904 924 - -
Phco7g01196 1415 SMART PHD_3 1009 1054 IPR001965 -
Phco7g01196 1415 SMART PHD_3 293 340 IPR001965 -
Phco7g01196 1415 SMART PHD_3 414 470 IPR001965 -
Phco7g01196 1415 SMART PHD_3 1130 1184 IPR001965 -
Phco7g01196 1415 MobiDBLite consensus disorder prediction 99 117 - -
Phco7g01196 1415 SUPERFAMILY FYVE/PHD zinc finger 283 340 IPR011011 -
Phco7g01196 1415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 945 1065 IPR013083 -
Phco7g01196 1415 MobiDBLite consensus disorder prediction 1262 1284 - -
Phco7g01196 1415 Pfam PHD-zinc-finger like domain 1076 1183 - -
Phco7g01196 1415 Pfam PHD-zinc-finger like domain 351 469 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco7g01196 Phco-Chr7 10391179 10404882 Dispersed/Proximal
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco7g01196 zf-HC5HC2H_2 2.1e-24 CL0390
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01196 7 10391179 10404882 Phco7g01196 7 10391179 10404882 ECH