Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01190 ATGCCTCGGCAACCGCCACCTCCACCGCCGCAGCAGCCCGGGGCTTTGGAACCGGCGGTATGGCAAGCCTGCGCTGGACCGTCTGTGGAAATCCCCAAGCCAAATTCTATGGTTTACTACTTCCCTCAGGGACACTTTGATCAAGCCTCTTCGCCTCCGCGAAACCTCTCCTCTTCCGTTCTGGCCAGACCATTCGTTACCTGCAACGTGGTCGCTGTTCAATTTCTTGCCGATCCTCTTACGGACGAGGTTTTTACAAAGATGGTTCTCCAACCTGTTGCTAATGTCTTCGCTGCTGCTCCCCTTCATACTCCTGCTGCTGCTCTCCCGCAAAAAGATGACAAAGAAGTTGTTTCATTCGCTAAGATTCTCACGCCGTCTGATGCCAACAACGGCGGGGGCTTCTCCGTGCCCAGGTTTTGCGCGGACTCTATCTTTCCGCCGCTGGACTACGACGAGGACCCGCCCGTGCAGAACCTCTCCGTCACTGACGTGCACGGCTTCACCTGGGAGTTCCGCCACATTTTCCGAGGGACTCCGCGCCGCCACCTGCTCACCACCGGCTGGAGCACGTTCGTCAATAACAAGAAGCTTGTCGCCGGGGACTCCGTCTTGTTCATGAAGACCGCCGACAAGCGTTTGTTAGTCGGAATTCGCCGCGCCACGCGCTTTTCTCCGGGAAGGGGCAGCTGCGTAAAACTCAGGTTAATTGAGGAGGAGGAGGAGGAGAATGAAGAGGTGAGGGGGGTTTTCTCGAGAGACGGGAAGGGGAAGCTGTCGGCTAAGGAGGTTGTGGAGGCGGCGGAGTTGGCGGTGCGGAACATGCAGTTTGAGGTTGTTTATTACCCGAAGGCTGGTTGGTCGGAGTTCGTGGTGAAGACTGAAGTGGTGGATGCAGCGATGAGGATTGCATGGAGAGATGGAATGAGAGTGAAGATGTCTGTGGAGACCGATGATTCGTCCAGGATGACGTGGTTTCAGGGTATGGTCTCTGCTGTCTCATATCAGGAGAATGGCCCATGGTTCTCTTCTCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGGGTTGCAGAATGCAAAGTGGGTTAGCCCTTGGCAGGTAGAACTTGTTTCCACCACACCTGCCCTTCATTCAGCATTCCCCTCAACAAAAAGGCTCAGAACTGCTAATGGTTCTTGGGTGTATACTAATGGAGAGGGAGACCTCTTTCCTATGACCGGATTCACTAATTCAGGAATGGGACACCTGAATCAAGCATTGTGGAGTTATTGTACTTTTCCTGCAGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTTCCAGTTATCCAAGGGACATGTCTCATCCGGGTATGGGTAATTCCTTTGGGAACAACACATTTTCAAGGCTGAATAATTTGTCCACAGAACCACAAGTTGGCGGCAGCTCTCAATCTGATGAACCATCCCCTGATAGCCGTAGTAGTTTCCATTCCTGTGTCACAGACACTGTTGGGAATCACAAAAGCAACTCAATAAAACCGGTGTCTGATTCAATTCAGCTATTTGGTGCGGTCATTCGGAAAGAACAACCTGTTCAAAGTAGTTTGACAGGCACTGGTTGCGCTAGCACCGAAGATAAAAAAGCCTTGGCATACAAGGGTTCTTGCTTGTGA 1674 0.5215 MPRQPPPPPPQQPGALEPAVWQACAGPSVEIPKPNSMVYYFPQGHFDQASSPPRNLSSSVLARPFVTCNVVAVQFLADPLTDEVFTKMVLQPVANVFAAAPLHTPAAALPQKDDKEVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYDEDPPVQNLSVTDVHGFTWEFRHIFRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFMKTADKRLLVGIRRATRFSPGRGSCVKLRLIEEEEEENEEVRGVFSRDGKGKLSAKEVVEAAELAVRNMQFEVVYYPKAGWSEFVVKTEVVDAAMRIAWRDGMRVKMSVETDDSSRMTWFQGMVSAVSYQENGPWFSSPWRMLQVTWDEPEGLQNAKWVSPWQVELVSTTPALHSAFPSTKRLRTANGSWVYTNGEGDLFPMTGFTNSGMGHLNQALWSYCTFPAGMQGARHDVFSASSFSSYPRDMSHPGMGNSFGNNTFSRLNNLSTEPQVGGSSQSDEPSPDSRSSFHSCVTDTVGNHKSNSIKPVSDSIQLFGAVIRKEQPVQSSLTGTGCASTEDKKALAYKGSCL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01190 557 SUPERFAMILY DNA-binding pseudobarrel domain 110 230 IPR015300 -
Phco7g01190 557 CDD B3_DNA 119 220 IPR003340 GO:0003677
Phco7g01190 557 Gene3D - 306 378 - -
Phco7g01190 557 Pfam Auxin response factor 267 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco7g01190 557 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 534 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco7g01190 557 MobiDBLite consensus disorder prediction 458 500 - -
Phco7g01190 557 FunFam Auxin response factor 118 222 - -
Phco7g01190 557 Gene3D - 117 222 IPR015300 -
Phco7g01190 557 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Phco7g01190 557 SMART B3_2 120 222 IPR003340 GO:0003677
Phco7g01190 557 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Phco7g01190 557 MobiDBLite consensus disorder prediction 457 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01190 Phco-Chr7 10308708 10311651 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco7g01190 B3 8.4e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01190 7 10308708 10311651 Phco7g01190 7 10308708 10311651 ECH
Phco3g01351 3 13363712 13366658 Phco7g01190 7 10308708 10311651 PCT